Create segmentation or export 3D model from binary data

Support
1

Operating system: Windows
Slicer version: 4.10
Expected behavior: Segment and export as .obj file
Actual behavior: Can’t segment. Also can’t load as binary labelmap.

I have some microscopy data which has effectively already been segmented into a binary TIFF stack. I want to export the fluorescent regions as an .obj file so I have a 3D model.

I’m not able to select any regions of the data for further segmentation (no threshold range can be selected). I have also tried importing the data as a binary labelmap, but it does not appear to work - I have looked in the Data and Segmentation modules but found no files there.

What am I doing wrong?

binary
binary1680×1050 137 KB

2

If this is rgb data you can use the Vector to Scalar Volume module to convert it, then you should be able to use it with the Segment Editor.

1 Like