Are there any tools for cropping segments as readily as volumes? Ideally, similar to volume cropping, I’d like to render my segments in 3D and adjust a bounding box where all segment labels outside are deleted. Thanks
I think the simplest is to use the Scissors tool with the rectangle option. Alternatively you can export the segmentation as a labelmap and then crop the volume.
Good to combine Segment-Editor (slicer.qMRMLSegmentEditorWidget()) and self.cv_roi = slicer.mrmlScene.AddNewNodeByClass(“vtkMRMLMarkupsROINode”) to have a customized module. So after all segments ready, take the Source-Volume’s dimensions as ROI-node’s initial settings; manually adjust ROIs for cropping, then apply the cropping as a mask to all segments…good to keep all original segments, have those masked segments to be new ones.