DICOM database problem

opetne · December 5, 2019, 9:14pm

Slicer 4.11.0 version
T
If I want to see series in the DICOM module, I see the patient name but there is nothing listed in the advanced part of it, I can’t see what kind of series does a patient have. If I want to load any series sometimes nothing happens after I clicked on it. I have to click on a series many, many times till it opens.

lassoan · December 5, 2019, 10:01pm

If you use latest preview release and create the database from scratch (choose an empty folder as database location in “DICOM database settings”) then it should all work well. If not, then let us know.

It is normal that clicking on a series has no effect. You can either double-click on a patient/study/series to load it or click “Load” button to load the selected items.

opetne · December 5, 2019, 10:22pm

Thank you Andras but nothing happens since I can’t click on creating new database option since it is not active…

opetne · December 5, 2019, 10:25pm

This is what I’ve found in the python module:

Logs

Traceback (most recent call last):
File “”, line 1, in
File “C:\Users\petnehazyors\AppData\Local\NA-MIC\Slicer 4.11.0-2019-12-02\lib\Python\Lib\imp.py”, line 170, in load_source
module = _exec(spec, sys.modules[name])
File “”, line 618, in _exec
File “”, line 674, in exec_module
File “”, line 781, in get_code
File “”, line 741, in source_to_code
File “”, line 219, in _call_with_frames_removed
File “C:/Users/petnehazyors/AppData/Roaming/NA-MIC/Extensions-28659/EasyClip/lib/Slicer-4.11/qt-scripted-modules/EasyClip.py”, line 41
print “-------Easy Clip Widget Setup---------”
^
SyntaxError: Missing parentheses in call to ‘print’. Did you mean print("-------Easy Clip Widget Setup---------")?
Traceback (most recent call last):
File “”, line 1, in
File “C:\Users\petnehazyors\AppData\Local\NA-MIC\Slicer 4.11.0-2019-12-02\lib\Python\Lib\imp.py”, line 170, in load_source
module = _exec(spec, sys.modules[name])
File “”, line 618, in _exec
File “”, line 674, in exec_module
File “”, line 781, in get_code
File “”, line 741, in source_to_code
File “”, line 219, in _call_with_frames_removed
File “C:/Users/petnehazyors/AppData/Roaming/NA-MIC/Extensions-28659/SlicerProstateAblation/lib/Slicer-4.11/qt-scripted-modules/ProstateAblation.py”, line 259
print slicer.dicomDatabase
^
SyntaxError: Missing parentheses in call to ‘print’. Did you mean print(slicer.dicomDatabase)?
Traceback (most recent call last):
File “”, line 1, in
File “C:\Users\petnehazyors\AppData\Local\NA-MIC\Slicer 4.11.0-2019-12-02\lib\Python\Lib\imp.py”, line 170, in load_source
module = _exec(spec, sys.modules[name])
File “”, line 618, in _exec
File “”, line 674, in exec_module
File “”, line 781, in get_code
File “”, line 741, in source_to_code
File “”, line 219, in _call_with_frames_removed
File “C:/Users/petnehazyors/AppData/Roaming/NA-MIC/Extensions-28659/ResectionPlanner/lib/Slicer-4.11/qt-scripted-modules/ResectionVolume.py”, line 229
except Exception, e:
^
SyntaxError: invalid syntax
Traceback (most recent call last):
File “”, line 1, in
File “C:\Users\petnehazyors\AppData\Local\NA-MIC\Slicer 4.11.0-2019-12-02\lib\Python\Lib\imp.py”, line 170, in load_source
module = _exec(spec, sys.modules[name])
File “”, line 618, in _exec
File “”, line 678, in exec_module
File “”, line 219, in _call_with_frames_removed
File “C:/Users/petnehazyors/AppData/Roaming/NA-MIC/Extensions-28659/ZFrameRegistration/lib/Slicer-4.11/qt-scripted-modules/ZFrameRegistrationWithROI.py”, line 8, in
from SlicerDevelopmentToolboxUtils.mixins import ModuleLogicMixin, ModuleWidgetMixin
File “C:\Users\petnehazyors\AppData\Roaming\NA-MIC\Extensions-28659\SlicerDevelopmentToolbox\lib\Slicer-4.11\qt-scripted-modules\SlicerDevelopmentToolboxUtils\mixins.py”, line 6, in
from packaging import version
ModuleNotFoundError: No module named ‘packaging’
TypeError: module.init() argument 1 must be str, not qSlicerScriptedLoadableModule

lassoan · December 5, 2019, 10:36pm

Could you please post a screenshot?

jamesobutler · December 6, 2019, 12:44am

If you uninstall the SlicerProstateAblation extension which is having problems and restart Slicer, can you then create a new Slicer database?

opetne · December 6, 2019, 8:41am

Dear Andras and James,

I uninstalled a lot of the extensions, I kept only what I think could be usefull for segmentation.
After a restart here are the erros logs:

Logs

Session start time …: 2019-12-06 09:38:40
Slicer version …: 4.11.0-2019-12-02 (revision 28659) win-amd64 - installed release
Operating system …: Windows / Professional / (Build 9200) - 64-bit
Memory …: 40840 MB physical, 46728 MB virtual
CPU …: GenuineIntel , 8 cores, 8 logical processors
VTK configuration …: OpenGL2 rendering, TBB threading
Qt configuration …: version 5.10.1, with SSL, requested OpenGL 3.2 (compatibility profile)
Developer mode enabled …: no
Prefer executable CLI …: yes
Application path …: C:/Users/petnehazyors/AppData/Local/NA-MIC/Slicer 4.11.0-2019-12-02/bin
Additional module paths …: C:/Users/petnehazyors/AppData/Roaming/NA-MIC/Extensions-28659/SurfaceWrapSolidify/lib/Slicer-4.11/qt-scripted-modules, C:/Users/petnehazyors/AppData/Roaming/NA-MIC/Extensions-28659/SegmentEditorExtraEffects/lib/Slicer-4.11/qt-scripted-modules, C:/Users/petnehazyors/AppData/Roaming/NA-MIC/Extensions-28659/Slicer-AirwaySegmentation/lib/Slicer-4.11/cli-modules, C:/Users/petnehazyors/AppData/Roaming/NA-MIC/Extensions-28659/Slicer-AirwaySegmentation/lib/Slicer-4.11/qt-scripted-modules, C:/Users/petnehazyors/AppData/Roaming/NA-MIC/Extensions-28659/SlicerVMTK/lib/Slicer-4.11/qt-loadable-modules, C:/Users/petnehazyors/AppData/Roaming/NA-MIC/Extensions-28659/SlicerVMTK/lib/Slicer-4.11/qt-scripted-modules, C:/Users/petnehazyors/AppData/Roaming/NA-MIC/Extensions-28659/ModelCropper/lib/Slicer-4.11/qt-scripted-modules, C:/Users/petnehazyors/AppData/Roaming/NA-MIC/Extensions-28659/SlicerIGT/lib/Slicer-4.11/qt-loadable-modules, C:/Users/petnehazyors/AppData/Roaming/NA-MIC/Extensions-28659/SlicerIGT/lib/Slicer-4.11/qt-scripted-modules, C:/Users/petnehazyors/AppData/Roaming/NA-MIC/Extensions-28659/SlicerCochlea/lib/Slicer-4.11/qt-scripted-modules, C:/Users/petnehazyors/AppData/Roaming/NA-MIC/Extensions-28659/SlicerElastix/lib/Slicer-4.11/qt-scripted-modules, C:/Users/petnehazyors/AppData/Roaming/NA-MIC/Extensions-28659/ShapeQuantifier/lib/Slicer-4.11/qt-scripted-modules
Traceback (most recent call last):
File “”, line 1, in
File “C:\Users\petnehazyors\AppData\Local\NA-MIC\Slicer 4.11.0-2019-12-02\lib\Python\Lib\imp.py”, line 170, in load_source
module = _exec(spec, sys.modules[name])
File “”, line 618, in _exec
File “”, line 674, in exec_module
File “”, line 781, in get_code
File “”, line 741, in source_to_code
File “”, line 219, in _call_with_frames_removed
File “C:/Users/petnehazyors/AppData/Roaming/NA-MIC/Extensions-28659/ShapeQuantifier/lib/Slicer-4.11/qt-scripted-modules/AnglePlanes.py”, line 72
print “-------Angle Planes Widget Setup-------”
^
SyntaxError: Missing parentheses in call to ‘print’. Did you mean print(“-------Angle Planes Widget Setup-------”)?
loadSourceAsModule - Failed to load file “C:/Users/petnehazyors/AppData/Roaming/NA-MIC/Extensions-28659/ShapeQuantifier/lib/Slicer-4.11/qt-scripted-modules/AnglePlanes.py” as module “AnglePlanes” !
Fail to instantiate module “AnglePlanes”
Traceback (most recent call last):
File “”, line 1, in
File “C:\Users\petnehazyors\AppData\Local\NA-MIC\Slicer 4.11.0-2019-12-02\lib\Python\Lib\imp.py”, line 170, in load_source
module = _exec(spec, sys.modules[name])
File “”, line 618, in _exec
File “”, line 674, in exec_module
File “”, line 781, in get_code
File “”, line 741, in source_to_code
File “”, line 219, in _call_with_frames_removed
File “C:/Users/petnehazyors/AppData/Roaming/NA-MIC/Extensions-28659/ShapeQuantifier/lib/Slicer-4.11/qt-scripted-modules/EasyClip.py”, line 42
print “-------Easy Clip Widget Setup---------”
^
SyntaxError: Missing parentheses in call to ‘print’. Did you mean print(“-------Easy Clip Widget Setup---------”)?
loadSourceAsModule - Failed to load file “C:/Users/petnehazyors/AppData/Roaming/NA-MIC/Extensions-28659/ShapeQuantifier/lib/Slicer-4.11/qt-scripted-modules/EasyClip.py” as module “EasyClip” !
Fail to instantiate module “EasyClip”
Traceback (most recent call last):
File “”, line 1, in
File “C:\Users\petnehazyors\AppData\Local\NA-MIC\Slicer 4.11.0-2019-12-02\lib\Python\Lib\imp.py”, line 170, in load_source
module = _exec(spec, sys.modules[name])
File “”, line 618, in _exec
File “”, line 674, in exec_module
File “”, line 781, in get_code
File “”, line 741, in source_to_code
File “”, line 219, in _call_with_frames_removed
File “C:/Users/petnehazyors/AppData/Roaming/NA-MIC/Extensions-28659/ShapeQuantifier/lib/Slicer-4.11/qt-scripted-modules/MeshStatistics.py”, line 35
print “-------Mesh Statistic Widget Setup-------”
^
SyntaxError: Missing parentheses in call to ‘print’. Did you mean print(“-------Mesh Statistic Widget Setup-------”)?
loadSourceAsModule - Failed to load file “C:/Users/petnehazyors/AppData/Roaming/NA-MIC/Extensions-28659/ShapeQuantifier/lib/Slicer-4.11/qt-scripted-modules/MeshStatistics.py” as module “MeshStatistics” !
Fail to instantiate module “MeshStatistics”
Traceback (most recent call last):
File “”, line 1, in
File “C:\Users\petnehazyors\AppData\Local\NA-MIC\Slicer 4.11.0-2019-12-02\lib\Python\Lib\imp.py”, line 170, in load_source
module = _exec(spec, sys.modules[name])
File “”, line 618, in _exec
File “”, line 674, in exec_module
File “”, line 781, in get_code
File “”, line 741, in source_to_code
File “”, line 219, in _call_with_frames_removed
File “C:/Users/petnehazyors/AppData/Roaming/NA-MIC/Extensions-28659/ShapeQuantifier/lib/Slicer-4.11/qt-scripted-modules/PickAndPaint.py”, line 27
print “-------Pick And Paint Widget Setup--------”
^
SyntaxError: Missing parentheses in call to ‘print’. Did you mean print(“-------Pick And Paint Widget Setup--------”)?
loadSourceAsModule - Failed to load file “C:/Users/petnehazyors/AppData/Roaming/NA-MIC/Extensions-28659/ShapeQuantifier/lib/Slicer-4.11/qt-scripted-modules/PickAndPaint.py” as module “PickAndPaint” !
Fail to instantiate module “PickAndPaint”
Traceback (most recent call last):
File “”, line 1, in
File “C:\Users\petnehazyors\AppData\Local\NA-MIC\Slicer 4.11.0-2019-12-02\lib\Python\Lib\imp.py”, line 170, in load_source
module = _exec(spec, sys.modules[name])
File “”, line 618, in _exec
File “”, line 674, in exec_module
File “”, line 781, in get_code
File “”, line 741, in source_to_code
File “”, line 219, in _call_with_frames_removed
File “C:/Users/petnehazyors/AppData/Roaming/NA-MIC/Extensions-28659/ShapeQuantifier/lib/Slicer-4.11/qt-scripted-modules/Q3DC.py”, line 40
print “-------Q3DC Widget Setup------”
^
SyntaxError: Missing parentheses in call to ‘print’. Did you mean print(“-------Q3DC Widget Setup------”)?
loadSourceAsModule - Failed to load file “C:/Users/petnehazyors/AppData/Roaming/NA-MIC/Extensions-28659/ShapeQuantifier/lib/Slicer-4.11/qt-scripted-modules/Q3DC.py” as module “Q3DC” !
Fail to instantiate module “Q3DC”
Traceback (most recent call last):
File “”, line 1, in
File “C:\Users\petnehazyors\AppData\Local\NA-MIC\Slicer 4.11.0-2019-12-02\lib\Python\Lib\imp.py”, line 170, in load_source
module = _exec(spec, sys.modules[name])
File “”, line 618, in _exec
File “”, line 674, in exec_module
File “”, line 781, in get_code
File “”, line 741, in source_to_code
File “”, line 219, in _call_with_frames_removed
File “C:/Users/petnehazyors/AppData/Roaming/NA-MIC/Extensions-28659/ShapeQuantifier/lib/Slicer-4.11/qt-scripted-modules/ShapeQuantifier.py”, line 89
print “----- Shape Quantifier widget setup -----”
^
SyntaxError: Missing parentheses in call to ‘print’. Did you mean print(“----- Shape Quantifier widget setup -----”)?
loadSourceAsModule - Failed to load file “C:/Users/petnehazyors/AppData/Roaming/NA-MIC/Extensions-28659/ShapeQuantifier/lib/Slicer-4.11/qt-scripted-modules/ShapeQuantifier.py” as module “ShapeQuantifier” !
Fail to instantiate module “ShapeQuantifier”
Traceback (most recent call last):
File “”, line 1, in
File “C:\Users\petnehazyors\AppData\Local\NA-MIC\Slicer 4.11.0-2019-12-02\lib\Python\Lib\imp.py”, line 170, in load_source
module = _exec(spec, sys.modules[name])
File “”, line 618, in _exec
File “”, line 674, in exec_module
File “”, line 781, in get_code
File “”, line 741, in source_to_code
File “”, line 219, in _call_with_frames_removed
File “C:/Users/petnehazyors/AppData/Roaming/NA-MIC/Extensions-28659/ShapeQuantifier/lib/Slicer-4.11/qt-scripted-modules/ShapeQuantifierCore.py”, line 43
print “UpdateThreeDView”
^
SyntaxError: Missing parentheses in call to ‘print’. Did you mean print(“UpdateThreeDView”)?
loadSourceAsModule - Failed to load file “C:/Users/petnehazyors/AppData/Roaming/NA-MIC/Extensions-28659/ShapeQuantifier/lib/Slicer-4.11/qt-scripted-modules/ShapeQuantifierCore.py” as module “ShapeQuantifierCore” !
Fail to instantiate module “ShapeQuantifierCore”
Error(s):
CLI executable: C:/Users/petnehazyors/AppData/Roaming/NA-MIC/Extensions-28659/SlicerVMTK/lib/Slicer-4.11/qt-loadable-modules/vtkvmtk.py
The process failed to start. Either the invoked program is missing, or you may have insufficient permissions to invoke the program.
Fail to instantiate module “vtkvmtk”
The following modules failed to be instantiated:
EasyClip
MeshStatistics
PickAndPaint
vtkvmtk
ShapeQuantifierCore
Q3DC
AnglePlanes
ShapeQuantifier
Scripted subject hierarchy plugin registered: Annotations
Scripted subject hierarchy plugin registered: SegmentEditor
Scripted subject hierarchy plugin registered: SegmentStatistics
Switch to module: “Welcome”
Loaded volume from file: C:/Users/petnehazyors/AppData/Roaming/NA-MIC/Extensions-28659/SlicerVMTK/lib/Slicer-4.11/qt-scripted-modules/Resources/Vesselness.png. Dimensions: 65x50x1. Number of components: 3. Pixel type: unsigned char.

And here is everything I’ve found in the python interactor:

Python 3.6.7 (default, Dec 3 2019, 23:21:59) [MSC v.1900 64 bit (AMD64)] on win32

Traceback (most recent call last):
File “”, line 1, in
File “C:\Users\petnehazyors\AppData\Local\NA-MIC\Slicer 4.11.0-2019-12-02\lib\Python\Lib\imp.py”, line 170, in load_source
module = _exec(spec, sys.modules[name])
File “”, line 618, in _exec
File “”, line 674, in exec_module
File “”, line 781, in get_code
File “”, line 741, in source_to_code
File “”, line 219, in _call_with_frames_removed
File “C:/Users/petnehazyors/AppData/Roaming/NA-MIC/Extensions-28659/ShapeQuantifier/lib/Slicer-4.11/qt-scripted-modules/AnglePlanes.py”, line 72
print “-------Angle Planes Widget Setup-------”
^
SyntaxError: Missing parentheses in call to ‘print’. Did you mean print(“-------Angle Planes Widget Setup-------”)?
Traceback (most recent call last):
File “”, line 1, in
File “C:\Users\petnehazyors\AppData\Local\NA-MIC\Slicer 4.11.0-2019-12-02\lib\Python\Lib\imp.py”, line 170, in load_source
module = _exec(spec, sys.modules[name])
File “”, line 618, in _exec
File “”, line 674, in exec_module
File “”, line 781, in get_code
File “”, line 741, in source_to_code
File “”, line 219, in _call_with_frames_removed
File “C:/Users/petnehazyors/AppData/Roaming/NA-MIC/Extensions-28659/ShapeQuantifier/lib/Slicer-4.11/qt-scripted-modules/EasyClip.py”, line 42
print “-------Easy Clip Widget Setup---------”
^
SyntaxError: Missing parentheses in call to ‘print’. Did you mean print(“-------Easy Clip Widget Setup---------”)?
Traceback (most recent call last):
File “”, line 1, in
File “C:\Users\petnehazyors\AppData\Local\NA-MIC\Slicer 4.11.0-2019-12-02\lib\Python\Lib\imp.py”, line 170, in load_source
module = _exec(spec, sys.modules[name])
File “”, line 618, in _exec
File “”, line 674, in exec_module
File “”, line 781, in get_code
File “”, line 741, in source_to_code
File “”, line 219, in _call_with_frames_removed
File “C:/Users/petnehazyors/AppData/Roaming/NA-MIC/Extensions-28659/ShapeQuantifier/lib/Slicer-4.11/qt-scripted-modules/MeshStatistics.py”, line 35
print “-------Mesh Statistic Widget Setup-------”
^
SyntaxError: Missing parentheses in call to ‘print’. Did you mean print(“-------Mesh Statistic Widget Setup-------”)?
Traceback (most recent call last):
File “”, line 1, in
File “C:\Users\petnehazyors\AppData\Local\NA-MIC\Slicer 4.11.0-2019-12-02\lib\Python\Lib\imp.py”, line 170, in load_source
module = _exec(spec, sys.modules[name])
File “”, line 618, in _exec
File “”, line 674, in exec_module
File “”, line 781, in get_code
File “”, line 741, in source_to_code
File “”, line 219, in _call_with_frames_removed
File “C:/Users/petnehazyors/AppData/Roaming/NA-MIC/Extensions-28659/ShapeQuantifier/lib/Slicer-4.11/qt-scripted-modules/PickAndPaint.py”, line 27
print “-------Pick And Paint Widget Setup--------”
^
SyntaxError: Missing parentheses in call to ‘print’. Did you mean print(“-------Pick And Paint Widget Setup--------”)?
Traceback (most recent call last):
File “”, line 1, in
File “C:\Users\petnehazyors\AppData\Local\NA-MIC\Slicer 4.11.0-2019-12-02\lib\Python\Lib\imp.py”, line 170, in load_source
module = _exec(spec, sys.modules[name])
File “”, line 618, in _exec
File “”, line 674, in exec_module
File “”, line 781, in get_code
File “”, line 741, in source_to_code
File “”, line 219, in _call_with_frames_removed
File “C:/Users/petnehazyors/AppData/Roaming/NA-MIC/Extensions-28659/ShapeQuantifier/lib/Slicer-4.11/qt-scripted-modules/Q3DC.py”, line 40
print “-------Q3DC Widget Setup------”
^
SyntaxError: Missing parentheses in call to ‘print’. Did you mean print(“-------Q3DC Widget Setup------”)?
Traceback (most recent call last):
File “”, line 1, in
File “C:\Users\petnehazyors\AppData\Local\NA-MIC\Slicer 4.11.0-2019-12-02\lib\Python\Lib\imp.py”, line 170, in load_source
module = _exec(spec, sys.modules[name])
File “”, line 618, in _exec
File “”, line 674, in exec_module
File “”, line 781, in get_code
File “”, line 741, in source_to_code
File “”, line 219, in _call_with_frames_removed
File “C:/Users/petnehazyors/AppData/Roaming/NA-MIC/Extensions-28659/ShapeQuantifier/lib/Slicer-4.11/qt-scripted-modules/ShapeQuantifier.py”, line 89
print “----- Shape Quantifier widget setup -----”
^
SyntaxError: Missing parentheses in call to ‘print’. Did you mean print(“----- Shape Quantifier widget setup -----”)?
Traceback (most recent call last):
File “”, line 1, in
File “C:\Users\petnehazyors\AppData\Local\NA-MIC\Slicer 4.11.0-2019-12-02\lib\Python\Lib\imp.py”, line 170, in load_source
module = _exec(spec, sys.modules[name])
File “”, line 618, in _exec
File “”, line 674, in exec_module
File “”, line 781, in get_code
File “”, line 741, in source_to_code
File “”, line 219, in _call_with_frames_removed
File “C:/Users/petnehazyors/AppData/Roaming/NA-MIC/Extensions-28659/ShapeQuantifier/lib/Slicer-4.11/qt-scripted-modules/ShapeQuantifierCore.py”, line 43
print “UpdateThreeDView”
^
SyntaxError: Missing parentheses in call to ‘print’. Did you mean print(“UpdateThreeDView”)?

cpinter · December 6, 2019, 10:56am

Based on the error messages it seems that the extension ShapeQuantifier is not compatible with the current Slicer (it would need to be updated to support Python 3).

Not sure what it has to do with the DICOM browser though. We’d need to see exactly what happens there. Can you post a screenshot about it when you cannot select a new DICOM database?

opetne · December 6, 2019, 8:28pm

Dear Csaba,

After I uninstalled a lot of extensions I can’t reconstruct the database problem.

Ors

Csaba Pinter via 3D Slicer Community slicer@discoursemail.com ezt írta (időpont: 2019. dec. 6., Pén 12:06):

lassoan · December 7, 2019, 12:23am

Do you mean that after uninstalling the extensions that caused the problems during startup, everything works well?

cpinter · December 7, 2019, 3:20pm

Unfortunately there are still some extensions that have not been updated to work with the current Slicer. For example the ShapeQuantifier extension (GitHub) has not changed in four years.

The good news is that Python3 migration is quite easy and usually it’s about 3-4 types of typical problems that can be fixed mechanically.

opetne · December 7, 2019, 3:46pm

Dear Andras,

yes, it seems now working ok.

Ors

Andras Lasso via 3D Slicer Community slicer@discoursemail.com ezt írta (időpont: 2019. dec. 7., Szo, 1:33):

opetne · December 8, 2019, 11:35am

Dear Andras,

I might be a bit too fast by saying that the problem is solved. This is the screen I see since 2 hours. Somehow the database still causes problems and there is not smooth load of the series.

If I have a series loaded I can’t see the details, because if I click on it I don’t know if anything happens, no window pops up, no changes can be seen, the software doesn’t says NOt responding just nothing happens. Or maybe some minutes later crashes the whole software.

Ors

Ors Petnehazy ors.petne@gmail.com ezt írta (időpont: 2019. dec. 7., Szo, 16:46):

lassoan · December 8, 2019, 2:37pm

It seems that the path you are importing data from is extremely long. Do you actually store data in so deep folder structure with so long names? Is it possible that you chose to import files from the DICOM database folder (maybe this can create an infinite loop)?

Are there any errors in the log?
Do you have multiple Slicer instances runnning at the same time?
Do you have the imported files on your local computer or loading them from a network drive?

opetne · December 9, 2019, 1:29pm

Dear Andras,

The files are stored on my computer, locally. I think the reason could be the someone (who installed it) named it “Ez a számítógép”… what was contained in the name of the path causing the problem

Ors

Andras Lasso via 3D Slicer Community slicer@discoursemail.com ezt írta (időpont: 2019. dec. 8., V, 15:47):

opetne · December 9, 2019, 1:37pm

I changed the name to my computer, not using special characters but still no changes in loading the DICOM files.

Ors Petnehazy ors.petne@gmail.com ezt írta (időpont: 2019. dec. 9., H, 14:29):

opetne · December 9, 2019, 1:39pm

Here is the complete error log:

Logs

Session start time …: 2019-12-09 14:25:10

Slicer version …: 4.11.0-2019-12-02 (revision 28659) win-amd64 - installed release

Operating system …: Windows / Professional / (Build 9200) - 64-bit

Memory …: 40840 MB physical, 46728 MB virtual

CPU …: GenuineIntel , 8 cores, 8 logical processors

VTK configuration …: OpenGL2 rendering, TBB threading

Qt configuration …: version 5.10.1, with SSL, requested OpenGL 3.2 (compatibility profile)

Developer mode enabled …: no

Prefer executable CLI …: yes

Application path …: C:/Users/petnehazyors/AppData/Local/NA-MIC/Slicer 4.11.0-2019-12-02/bin

Additional module paths …: C:/Users/petnehazyors/AppData/Roaming/NA-MIC/Extensions-28659/SurfaceWrapSolidify/lib/Slicer-4.11/qt-scripted-modules, C:/Users/petnehazyors/AppData/Roaming/NA-MIC/Extensions-28659/SegmentEditorExtraEffects/lib/Slicer-4.11/qt-scripted-modules, C:/Users/petnehazyors/AppData/Roaming/NA-MIC/Extensions-28659/Slicer-AirwaySegmentation/lib/Slicer-4.11/cli-modules, C:/Users/petnehazyors/AppData/Roaming/NA-MIC/Extensions-28659/Slicer-AirwaySegmentation/lib/Slicer-4.11/qt-scripted-modules, C:/Users/petnehazyors/AppData/Roaming/NA-MIC/Extensions-28659/SlicerVMTK/lib/Slicer-4.11/qt-loadable-modules, C:/Users/petnehazyors/AppData/Roaming/NA-MIC/Extensions-28659/SlicerVMTK/lib/Slicer-4.11/qt-scripted-modules, C:/Users/petnehazyors/AppData/Roaming/NA-MIC/Extensions-28659/ModelCropper/lib/Slicer-4.11/qt-scripted-modules, C:/Users/petnehazyors/AppData/Roaming/NA-MIC/Extensions-28659/SlicerIGT/lib/Slicer-4.11/qt-loadable-modules, C:/Users/petnehazyors/AppData/Roaming/NA-MIC/Extensions-28659/SlicerIGT/lib/Slicer-4.11/qt-scripted-modules, C:/Users/petnehazyors/AppData/Roaming/NA-MIC/Extensions-28659/SlicerCochlea/lib/Slicer-4.11/qt-scripted-modules, C:/Users/petnehazyors/AppData/Roaming/NA-MIC/Extensions-28659/SlicerElastix/lib/Slicer-4.11/qt-scripted-modules, C:/Users/petnehazyors/AppData/Roaming/NA-MIC/Extensions-28659/ShapeQuantifier/lib/Slicer-4.11/qt-scripted-modules, C:/Users/petnehazyors/AppData/Roaming/NA-MIC/Extensions-28659/QuantitativeReporting/lib/Slicer-4.11/qt-scripted-modules, C:/Users/petnehazyors/AppData/Roaming/NA-MIC/Extensions-28659/DCMQI/lib/Slicer-4.11/cli-modules, C:/Users/petnehazyors/AppData/Roaming/NA-MIC/Extensions-28659/PETDICOMExtension/lib/Slicer-4.11/cli-modules, C:/Users/petnehazyors/AppData/Roaming/NA-MIC/Extensions-28659/PETDICOMExtension/lib/Slicer-4.11/qt-scripted-modules, C:/Users/petnehazyors/AppData/Roaming/NA-MIC/Extensions-28659/SlicerDevelopmentToolbox/lib/Slicer-4.11/qt-scripted-modules

Traceback (most recent call last):

File “”, line 1, in

File “C:\Users\petnehazyors\AppData\Local\NA-MIC\Slicer 4.11.0-2019-12-02\lib\Python\Lib\imp.py”, line 170, in load_source

module = _exec(spec, sys.modules[name])

File “”, line 618, in _exec

File “”, line 674, in exec_module

File “”, line 781, in get_code

File “”, line 741, in source_to_code

File “”, line 219, in _call_with_frames_removed

File “C:/Users/petnehazyors/AppData/Roaming/NA-MIC/Extensions-28659/ShapeQuantifier/lib/Slicer-4.11/qt-scripted-modules/AnglePlanes.py”, line 72

print “-------Angle Planes Widget Setup-------”

^

SyntaxError: Missing parentheses in call to ‘print’. Did you mean print("-------Angle Planes Widget Setup-------")?

loadSourceAsModule - Failed to load file “C:/Users/petnehazyors/AppData/Roaming/NA-MIC/Extensions-28659/ShapeQuantifier/lib/Slicer-4.11/qt-scripted-modules/AnglePlanes.py” as module “AnglePlanes” !

Fail to instantiate module “AnglePlanes”

Traceback (most recent call last):

File “”, line 1, in

File “C:\Users\petnehazyors\AppData\Local\NA-MIC\Slicer 4.11.0-2019-12-02\lib\Python\Lib\imp.py”, line 170, in load_source

module = _exec(spec, sys.modules[name])

File “”, line 618, in _exec

File “”, line 678, in exec_module

File “”, line 219, in _call_with_frames_removed

File “C:/Users/petnehazyors/AppData/Roaming/NA-MIC/Extensions-28659/QuantitativeReporting/lib/Slicer-4.11/qt-scripted-modules/DICOMSegmentationPlugin.py”, line 14, in

from SlicerDevelopmentToolboxUtils.mixins import ModuleLogicMixin

File “C:\Users\petnehazyors\AppData\Roaming\NA-MIC\Extensions-28659\SlicerDevelopmentToolbox\lib\Slicer-4.11\qt-scripted-modules\SlicerDevelopmentToolboxUtils\mixins.py”, line 6, in

from packaging import version

ModuleNotFoundError: No module named ‘packaging’

loadSourceAsModule - Failed to load file “C:/Users/petnehazyors/AppData/Roaming/NA-MIC/Extensions-28659/QuantitativeReporting/lib/Slicer-4.11/qt-scripted-modules/DICOMSegmentationPlugin.py” as module “DICOMSegmentationPlugin” !

Fail to instantiate module “DICOMSegmentationPlugin”

Traceback (most recent call last):

File “”, line 1, in

File “C:\Users\petnehazyors\AppData\Local\NA-MIC\Slicer 4.11.0-2019-12-02\lib\Python\Lib\imp.py”, line 170, in load_source

module = _exec(spec, sys.modules[name])

File “”, line 618, in _exec

File “”, line 678, in exec_module

File “”, line 219, in _call_with_frames_removed

File “C:/Users/petnehazyors/AppData/Roaming/NA-MIC/Extensions-28659/QuantitativeReporting/lib/Slicer-4.11/qt-scripted-modules/DICOMTID1500Plugin.py”, line 12, in

from SlicerDevelopmentToolboxUtils.mixins import ModuleLogicMixin

File “C:\Users\petnehazyors\AppData\Roaming\NA-MIC\Extensions-28659\SlicerDevelopmentToolbox\lib\Slicer-4.11\qt-scripted-modules\SlicerDevelopmentToolboxUtils\mixins.py”, line 6, in

from packaging import version

ModuleNotFoundError: No module named ‘packaging’

loadSourceAsModule - Failed to load file “C:/Users/petnehazyors/AppData/Roaming/NA-MIC/Extensions-28659/QuantitativeReporting/lib/Slicer-4.11/qt-scripted-modules/DICOMTID1500Plugin.py” as module “DICOMTID1500Plugin” !

Fail to instantiate module “DICOMTID1500Plugin”

Traceback (most recent call last):

File “”, line 1, in

File “C:\Users\petnehazyors\AppData\Local\NA-MIC\Slicer 4.11.0-2019-12-02\lib\Python\Lib\imp.py”, line 170, in load_source

module = _exec(spec, sys.modules[name])

File “”, line 618, in _exec

File “”, line 674, in exec_module

File “”, line 781, in get_code

File “”, line 741, in source_to_code

File “”, line 219, in _call_with_frames_removed

File “C:/Users/petnehazyors/AppData/Roaming/NA-MIC/Extensions-28659/ShapeQuantifier/lib/Slicer-4.11/qt-scripted-modules/EasyClip.py”, line 42

print “-------Easy Clip Widget Setup---------”

^

SyntaxError: Missing parentheses in call to ‘print’. Did you mean print("-------Easy Clip Widget Setup---------")?

loadSourceAsModule - Failed to load file “C:/Users/petnehazyors/AppData/Roaming/NA-MIC/Extensions-28659/ShapeQuantifier/lib/Slicer-4.11/qt-scripted-modules/EasyClip.py” as module “EasyClip” !

Fail to instantiate module “EasyClip”

Traceback (most recent call last):

File “”, line 1, in

File “C:\Users\petnehazyors\AppData\Local\NA-MIC\Slicer 4.11.0-2019-12-02\lib\Python\Lib\imp.py”, line 170, in load_source

module = _exec(spec, sys.modules[name])

File “”, line 618, in _exec

File “”, line 674, in exec_module

File “”, line 781, in get_code

File “”, line 741, in source_to_code

File “”, line 219, in _call_with_frames_removed

File “C:/Users/petnehazyors/AppData/Roaming/NA-MIC/Extensions-28659/ShapeQuantifier/lib/Slicer-4.11/qt-scripted-modules/MeshStatistics.py”, line 35

print “-------Mesh Statistic Widget Setup-------”

^

SyntaxError: Missing parentheses in call to ‘print’. Did you mean print("-------Mesh Statistic Widget Setup-------")?

loadSourceAsModule - Failed to load file “C:/Users/petnehazyors/AppData/Roaming/NA-MIC/Extensions-28659/ShapeQuantifier/lib/Slicer-4.11/qt-scripted-modules/MeshStatistics.py” as module “MeshStatistics” !

Fail to instantiate module “MeshStatistics”

Traceback (most recent call last):

File “”, line 1, in

File “C:\Users\petnehazyors\AppData\Local\NA-MIC\Slicer 4.11.0-2019-12-02\lib\Python\Lib\imp.py”, line 170, in load_source

module = _exec(spec, sys.modules[name])

File “”, line 618, in _exec

File “”, line 674, in exec_module

File “”, line 781, in get_code

File “”, line 741, in source_to_code

File “”, line 219, in _call_with_frames_removed

File “C:/Users/petnehazyors/AppData/Roaming/NA-MIC/Extensions-28659/ShapeQuantifier/lib/Slicer-4.11/qt-scripted-modules/PickAndPaint.py”, line 27

print “-------Pick And Paint Widget Setup--------”

^

SyntaxError: Missing parentheses in call to ‘print’. Did you mean print("-------Pick And Paint Widget Setup--------")?

loadSourceAsModule - Failed to load file “C:/Users/petnehazyors/AppData/Roaming/NA-MIC/Extensions-28659/ShapeQuantifier/lib/Slicer-4.11/qt-scripted-modules/PickAndPaint.py” as module “PickAndPaint” !

Fail to instantiate module “PickAndPaint”

Traceback (most recent call last):

File “”, line 1, in

File “C:\Users\petnehazyors\AppData\Local\NA-MIC\Slicer 4.11.0-2019-12-02\lib\Python\Lib\imp.py”, line 170, in load_source

module = _exec(spec, sys.modules[name])

File “”, line 618, in _exec

File “”, line 674, in exec_module

File “”, line 781, in get_code

File “”, line 741, in source_to_code

File “”, line 219, in _call_with_frames_removed

File “C:/Users/petnehazyors/AppData/Roaming/NA-MIC/Extensions-28659/ShapeQuantifier/lib/Slicer-4.11/qt-scripted-modules/Q3DC.py”, line 40

print “-------Q3DC Widget Setup------”

^

SyntaxError: Missing parentheses in call to ‘print’. Did you mean print("-------Q3DC Widget Setup------")?

loadSourceAsModule - Failed to load file “C:/Users/petnehazyors/AppData/Roaming/NA-MIC/Extensions-28659/ShapeQuantifier/lib/Slicer-4.11/qt-scripted-modules/Q3DC.py” as module “Q3DC” !

Fail to instantiate module “Q3DC”

Traceback (most recent call last):

File “”, line 1, in

File “C:\Users\petnehazyors\AppData\Local\NA-MIC\Slicer 4.11.0-2019-12-02\lib\Python\Lib\imp.py”, line 170, in load_source

module = _exec(spec, sys.modules[name])

File “”, line 618, in _exec

File “”, line 678, in exec_module

File “”, line 219, in _call_with_frames_removed

File “C:/Users/petnehazyors/AppData/Roaming/NA-MIC/Extensions-28659/QuantitativeReporting/lib/Slicer-4.11/qt-scripted-modules/QuantitativeReporting.py”, line 12, in

from DICOMSegmentationPlugin import DICOMSegmentationExporter

ImportError: cannot import name ‘DICOMSegmentationExporter’

loadSourceAsModule - Failed to load file “C:/Users/petnehazyors/AppData/Roaming/NA-MIC/Extensions-28659/QuantitativeReporting/lib/Slicer-4.11/qt-scripted-modules/QuantitativeReporting.py” as module “QuantitativeReporting” !

Fail to instantiate module “QuantitativeReporting”

Traceback (most recent call last):

File “”, line 1, in

File “C:\Users\petnehazyors\AppData\Local\NA-MIC\Slicer 4.11.0-2019-12-02\lib\Python\Lib\imp.py”, line 170, in load_source

module = _exec(spec, sys.modules[name])

File “”, line 618, in _exec

File “”, line 674, in exec_module

File “”, line 781, in get_code

File “”, line 741, in source_to_code

File “”, line 219, in _call_with_frames_removed

File “C:/Users/petnehazyors/AppData/Roaming/NA-MIC/Extensions-28659/ShapeQuantifier/lib/Slicer-4.11/qt-scripted-modules/ShapeQuantifier.py”, line 89

print “----- Shape Quantifier widget setup -----”

^

SyntaxError: Missing parentheses in call to ‘print’. Did you mean print("----- Shape Quantifier widget setup -----")?

loadSourceAsModule - Failed to load file “C:/Users/petnehazyors/AppData/Roaming/NA-MIC/Extensions-28659/ShapeQuantifier/lib/Slicer-4.11/qt-scripted-modules/ShapeQuantifier.py” as module “ShapeQuantifier” !

Fail to instantiate module “ShapeQuantifier”

Traceback (most recent call last):

File “”, line 1, in

File “C:\Users\petnehazyors\AppData\Local\NA-MIC\Slicer 4.11.0-2019-12-02\lib\Python\Lib\imp.py”, line 170, in load_source

module = _exec(spec, sys.modules[name])

File “”, line 618, in _exec

File “”, line 674, in exec_module

File “”, line 781, in get_code

File “”, line 741, in source_to_code

File “”, line 219, in _call_with_frames_removed

File “C:/Users/petnehazyors/AppData/Roaming/NA-MIC/Extensions-28659/ShapeQuantifier/lib/Slicer-4.11/qt-scripted-modules/ShapeQuantifierCore.py”, line 43

print “UpdateThreeDView”

^

SyntaxError: Missing parentheses in call to ‘print’. Did you mean print(“UpdateThreeDView”)?

loadSourceAsModule - Failed to load file “C:/Users/petnehazyors/AppData/Roaming/NA-MIC/Extensions-28659/ShapeQuantifier/lib/Slicer-4.11/qt-scripted-modules/ShapeQuantifierCore.py” as module “ShapeQuantifierCore” !

Fail to instantiate module “ShapeQuantifierCore”

Error(s):

CLI executable: C:/Users/petnehazyors/AppData/Roaming/NA-MIC/Extensions-28659/SlicerVMTK/lib/Slicer-4.11/qt-loadable-modules/vtkvmtk.py

The process failed to start. Either the invoked program is missing, or you may have insufficient permissions to invoke the program.

Fail to instantiate module “vtkvmtk”

The following modules failed to be instantiated:

vtkvmtk

AnglePlanes

EasyClip

Q3DC

ShapeQuantifierCore

MeshStatistics

ShapeQuantifier

PickAndPaint

DICOMSegmentationPlugin

QuantitativeReporting

DICOMTID1500Plugin

Scripted subject hierarchy plugin registered: Annotations

When loading module “QuantitativeReportingTests” , the dependency “QuantitativeReporting” failed to be loaded.

Scripted subject hierarchy plugin registered: SegmentEditor

Scripted subject hierarchy plugin registered: SegmentStatistics

Switch to module: “Welcome”

Loaded volume from file: C:/Users/petnehazyors/AppData/Roaming/NA-MIC/Extensions-28659/SlicerVMTK/lib/Slicer-4.11/qt-scripted-modules/Resources/Vesselness.png. Dimensions: 65x50x1. Number of components: 3. Pixel type: unsigned char.

Switch to module: “DICOM”

DICOMParametricMapPluginClass : Caching files

DICOMParametricMapPluginClass : Using cached files

MultiVolumeImportPlugin::examine