I am currently segmenting something from a screenshot. Therefore, it is a 2D image. I am wanting to make it into a 2D surface mesh. I was told since 3D slicer will only export as 3D .stl files, to duplicate the segment and put distance between them. As a beginner, I really have no idea how to do that. Could you help?
What is the imaging modality? What would you like to segment? Do you have some constraints (maximum time, required accuracy, available operator expertise, …)?
I am segmenting collagen beams. I do not know anything about constraints. I segmented the beams and made a model. I was told to overlay a second segmentation of the same beams 30 micrometers above the first. I was wondering if there was any way to do that with only one image slice.
If you don’t have any constraints - you have the necessary expertise to segment what you need with sufficient accuracy and you can spend as much time with it as needed - then you can use existing segmentation tools in Segment Editor to manually segment the image.
You can add the same slice to a volume by adding a filename similar to the original one (for example, image001.jpg, image002.jpg) and load it with Single slice option disabled.
For a thicker slice, you don’t need to duplicate slices, but you can set a larger spacing value for the third axis.
If this does not fully answer you question then please draw a sketch or explain it in more detail what you want to achieve. Why do you want to overlay a “second segmentation”? What is the overall goal of your project? How this specific task (“overlaying a second segmentation 30 micrometer above the first”) will help you to achieve that?