Operating system: Mac Slicer version: 4.10.2 Expected behavior: Has editor module Actual behavior: No editor module Hi everyone I normally run my DTI analysis using Windows, but wanted to try out whitematteranalysis and moved to a Mac to test it out. Normally on Windows (running 4.10.1) when I …

Hi Steve, Thanks for your response. I’m not sure how to check whether the code is checking the transforms due to my limited coding/programming knowledge… However, I think you’re on the right track as my dwi, baseline, and brainmask have the same spacing and origin (with some floating number differ…

Maybe this is the same question as this issue: [image] Where can I found Editor module Support You may search it or click the all modules: [image]

Thanks Steve I’m not sure how I missed it before… However, I know the Editor module is being replaced by Segment Editor. I tried editing the mask using the Segment Editor but there’s no option to do so. Is it possible?

@LearningSlicerYay - at the bottom of the Segmentations module there’s an import/export option that lets you bring in labelmaps as segmentations. Then you can export them again if you need a labelmap for other processing.

To convert with 2 mouse clicks, you can also go to Data module and right-click on the labelmap or segmentation node and choose to convert to segmentation or labelmap.

Hi all, I’ve tried running this a couple times but every time I edit the brainmask and then try to run the DTI estimation, I get the following error: Diffusion Tensor Estimation standard error: C:/…/NA-MIC/Extensions-27931/SlicerDMRI/lib/Slicer-4.10/cli-modules/DWIToDTIEstimation.exe: Error read…

You can check the tensor estimation code is checking the transforms . You can look at this in the Volume Information tab of the Volumes module. The exported labelmap should match the master volume used to generate the segmentation.

Editing DTI brain mask on Mac

Support

pieper (Steve Pieper (Isomics, Inc.)) February 24, 2020, 4:46pm 2

Maybe this is the same question as this issue:

Topic		Replies	Views
Edit existing segmentation Support segmentation	8	3982	July 2, 2021
Diffusion tensor estimation from a manually segmented brain mask Support	1	25	March 26, 2026
DTI Brain Mask Including Non-Brain Tissue Support dti	33	2419	May 27, 2019
Editing mask after Swiss Skull Stripping Support	4	685	June 26, 2020
Where can I found Editor module Support	9	1210	February 25, 2020

Editing DTI brain mask on Mac

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