Export Default "Reformat" Registration

Support
1

I have an angled T2w sequence and a straight axial T1w. When I use the T2w as a base, the T1w seems to automatically adjust to nicely align with the anatomy in the T2w sequence and is called “Reformat” in the image viewer. Is there a way to export these reformatted sequences, specifically the T1w as NIFTIs? Or do I need to do manual registration and resampling still?

From a previous thread, it’s my understanding that manual registration/resampling isn’t necessary because Slicer displays volumes by their physical location.

Thank you in advance for any help!

ReformatT2wT1w
ReformatT2wT1w724×240 46 KB

2

If you just want to resample one volume in the space of another you can use this with an identity transform:

https://slicer.readthedocs.io/en/latest/user_guide/modules/resamplescalarvectordwivolume.html