Hi, I’ve been reading the threads about naming/numbering and the colormaps for segmentations: Export Segmentation as Labeled LabelMap Copying segment names/colors from one segmentation to another I am not sure to be able to export the labels according to the colortable properly: similar to @appa…

[image] jhlegarreta: I made sure that I am using exactly the names in my colortable, and have simplified it t As I wrote above, you need to use the color names that show up in Colors module, which is not exactly what is stored internally in the color table file (due to spaces are replaced by …

Exporting a segmentation paired to a custom colortable

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lassoan (Andras Lasso) Split this topic April 29, 2024, 1:55pm 9

10 posts were split to a new topic: Create standard terminology for new segmentation project

Topic		Replies	Views
Preserve colors from segment editor node and export it as Nifti LabelMap Support segmentation , nifti , file-export , labelmap	8	547	December 1, 2023
Segmentation terminology to labelmap indices Support segmentation , segment	2	221	January 23, 2023
Converting labelmapvolume node with only one label to segmentation node does not use colour table Support	7	695	January 13, 2021
Export Segmentation as Labeled LabelMap Support	17	3476	May 12, 2023
How to maintained consistent colortable across different segmentation annotation Support	0	277	October 29, 2020

Exporting a segmentation paired to a custom colortable

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