HD_BET does not work in latest Slicer Preview Release

Development
1

While the code below works without any errors in the stable version, it gives an error in the preview version.

import HDBrainExtractionTool             
        
HDBetLogic = HDBrainExtractionTool.HDBrainExtractionToolLogic()                            
        
brainNode = slicer.mrmlScene.AddNewNodeByClass('vtkMRMLScalarVolumeNode')        
brainSegNode = slicer.mrmlScene.AddNewNodeByClass('vtkMRMLSegmentationNode')
HDBetLogic.process(masterVolumeNode,brainNode ,brainSegNode ,0)
slicer.util.setSliceViewerLayers(background=brainNode)

image

  File "C:/ProgramData/slicer.org/Slicer5.3.0/slicer.org/Extensions-31866/HDBrainExtraction/lib/Slicer-5.3/qt-scripted-modules/HDBrainExtractionTool.py", line 346, in process
    from HD_BET.run import run_hd_bet
ModuleNotFoundError: No module named 'HD_BET'
2

Please post the exact error.

Also, it could help to post a fully reproducible example that someone can easily paste into the python console to reproduce what you are seeing. E.g. us the sample data methods to load data, etc.

1 Like
3

@Muhammed_Fatih_Talu You need to install prerequisite packages (pytorch and hd_bet). You can do that by running the module once using the GUI. If you install and run the module from script, make sure you call HDBetLogic.setupPythonRequirements() before HDBetLogic.process(...).