Hi,
OS: Windows 10
slicer: 4.8.1
I have a MR volume:
dimensions: 120x256x256
spacing: 1mm x 1mm x 1mm
origin: 0mm 0mm 0mm
IJK to RAS direction matrix:
0 0 1
0 1 0
1 0 0
after apply skullStripper:
got a brain mask(LabelMapVolumeNode):
dimensions: 256x256x80
spacing: 1mm x 1mm x 1.5mm
origin: 256mm 256mm 0mm
IJK to RAS direction matrix:
-1 0 0
0 -1 0
0 0 -1
Confusion: Why the brain mask’s image properties are different with the original MR image?
Question: Is there a quick/easy way to apply the brain mask on the original MR image in python script(mask out the MR image background)?
Any suggestions are greatly appreciated!
Thanks!
YingLi