How to install extensions from the extension manager with PythonSlicer

pll_llq · November 30, 2021, 6:05pm

Hi

I’m building a docker container chain for testing purposes and I ran into a problem that I can’t install an extension from the extension manager while building the image.

Normally I would use something similar to the example in the script repository but the problem is that in PythonSlicer there is no slicer.app.

Can anyone advice how to move forward with this issue?

pll_llq · November 30, 2021, 6:07pm

I think I’ve found it.

I’ll try to follow the example set here

github.com

Slicer/SlicerDocker/blob/master/slicer-notebook/install.sh

#!/bin/bash

set -e
set +x

script_dir=$(cd $(dirname $0) || exit 1; pwd)
PROG=$(basename $0)

err() { echo -e >&2 ERROR: $@\\n; }
die() { err $@; exit 1; }

if [ "$#" -ne 1 ]; then
  die "Usage: $PROG /path/to/Slicer-X.Y.Z-linux-amd64/Slicer"
fi

slicer_executable=$1

################################################################################
# Set up headless environment
source $script_dir/start-xorg.sh

This file has been truncated. show original

and create an install script that I will run during container build

jcfr · December 1, 2021, 7:24am

You should find more information here: https://slicer.readthedocs.io/en/latest/developer_guide/script_repository.html#install-slicer

pll_llq · December 1, 2021, 7:32am

Yep. My actual problem was that I was using an older example that referenced the old extension manager api

Topic		Replies	Views
Installing Slicer extension from script Development	5	580	December 28, 2023
Installing extension inside a Dockerfile Support	17	1368	January 1, 2022
How to install SlicerRT extension in docker (slicerDocker) container? Support extensions-manager , slicerrt , docker	1	592	January 3, 2022
Programatically install extensions Development extensions-manager , python	1	625	August 18, 2021
Build Slicer docker image with preinstalled elastix Support docker	21	1889	December 30, 2021

How to install extensions from the extension manager with PythonSlicer

Related topics