Operating system: Windows 10 Slicer version: 4.10 Hi all, I am relatively new to the 3D Slicer program and currently undergoing the precise localization of electrodes after deep brain stimulation (DBS) surgery. I’ve constructed the shape of the electrodes. But the precise localization in the br…

This paper would be a good place to start: https://www.researchgate.net/publication/262075665_PyDBS_an_automated_image_processing_workflow_for_deep_brain_stimulation_surgery

STN might be easier to identify on the coronal views of your own data, if you used an isotropic resolution.

Maybe you can refer to Lead-DBS, which has achieved such a goal! Some registration methods can be used to develop your own module for this!

How to merge MRI and brain atlas

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How to merge MRI and brain atlas

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