I trained a CT segmentation model that saves its result (n x 512 x 512 binary label map) into a .nii.gz file. I tried to import the segmentation file into slicer, but the segmentation mask always appeared outside the CT image. I tried to change orientation, change dimension order and save the resu…

Import nifti segmentation files

pieper (Steve Pieper (Isomics, Inc.)) April 11, 2024, 6:53pm 2

You’ll find a lot of information about nifti orientation issues in the forum.

This thread might help:

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