Issues with "fill between slices

Slicer version 4.9.0-2018-05-30

Model Name: iMac
Model Identifier: iMac18,3
Processor Name: Intel Core i7
Processor Speed: 4.2 GHz
Number of Processors: 1
Total Number of Cores: 4
L2 Cache (per Core): 256 KB
L3 Cache: 8 MB
Memory: 64 GB

I have been segmenting every 2nd, 4th or 6th section and then filling between slices. I get some weird results like in the attached image:

The adjacent image looks like this:

Why would it interpolate that as a square?
Also, why can’t I edit the layer to refine the interpolation?

Thank you for any help on this subject.


Fill between slices effect requires that slice views are aligned with segmentation axes. Download Slicer nightly build tomorrow or later. That version shows a warning button if there is a misalignment and clicking it will align your slice viewers to the volume.

You can edit the interpolation while the Fill between segments is active - then you have to provide a complete segmentation in that slice. After you applied Fill between segments, then you should be able to make any small adjustments. If it does not work then maybe it is caused by the same misalignment as described above and the same fix applies.