Good afternoon, I’m trying to save a big bunch of .stl files to .nrrd binary label maps through python. I’m using the code below: volume = slicer.util.loadVolume('C:\\Users\mreib\OneDrive - upf.edu\Burdeos\images\Bordeaux_Case1\image.mha', returnNode=True) segmentation = slicer.util.loadSegmentati…

It is almost as simple. You can use PythonSlicer Myscript.py (there are a couple of variants - see here ).

Type help(slicer.modules.segmentations.logic().ExportSegmentsToLabelmapNode) in the Python console or read the API documentation to get information on what parameters are needed. You may also find the numerous segmentation examples in script repository useful.

I have managed to solve it, but thank you very much anyways! Now I have a problem running the script from the python interactor. I suppose it isn’t as simple as using ‘python Myscript.py’.

Thanks for your help! I’m sorry for asking such simple questions.

Load a .stl file and save it to a binary label map through

Support

Topic		Replies	Views
Combine STLs and export as NRRD Development segmentation	3	1050	December 11, 2021
Save .nrrd file into STL file Support	5	6680	March 3, 2022
Converting .stl files to binary label maps in .nii format using Python Support segmentation , python , binarylabelmap , stl	11	6937	August 25, 2024
Converting a STL file to nifti Support	7	2190	November 17, 2020
How to convert stl to nii Support segmentation , python , segmentations , segment-editor	2	703	December 27, 2024

Load a .stl file and save it to a binary label map through

Related topics