Good afternoon, I’m trying to save a big bunch of .stl files to .nrrd binary label maps through python. I’m using the code below: volume = slicer.util.loadVolume('C:\\Users\mreib\OneDrive - upf.edu\Burdeos\images\Bordeaux_Case1\image.mha', returnNode=True) segmentation = slicer.util.loadSegmentati…

It is almost as simple. You can use PythonSlicer Myscript.py (there are a couple of variants - see here ).

Type help(slicer.modules.segmentations.logic().ExportSegmentsToLabelmapNode) in the Python console or read the API documentation to get information on what parameters are needed. You may also find the numerous segmentation examples in script repository useful.

I have managed to solve it, but thank you very much anyways! Now I have a problem running the script from the python interactor. I suppose it isn’t as simple as using ‘python Myscript.py’.

Thanks for your help! I’m sorry for asking such simple questions.

Load a .stl file and save it to a binary label map through

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Load a .stl file and save it to a binary label map through

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