I tried MONAI AutoSeg3D auto-segmentation on CMF scan (CBCT).
I see that the segmentation results appear like as if it was done on a downsampled image.
I have used Whole Body segmentation TS2. I think TS2 implies Total Segmentator V2. I Observed a similar result when I used the Total Segmentator extension.
I also see the following log in the AutoSeg3d:
Using orientation_ras
Using crop_foreground
Using resample with resample_resolution [1.5, 1.5, 1.5]
Running Inference ...
So it appears it resamples the image to 1.5x1.5x1.5
Is it possible to run the AutoSeg3D to get a better(finer) segmentation mask result? The extension currently does not provide such a control.
@Gauthier thanks for your reply.
Yes, I have used DentalSegmentator and AMASSS. They perform better. I wanted to see the performance of this tool as well. Basically, then use the best one.
On Dental Segmentator: Only the extension code is open source, however I could not find the implementation on auto segmentation model training. Is that also available, say if someone wants to extend work on Dental Segmentator?
We haven’t used it for now, so I could not tell you more about the performance bumps that coud be obtained. It will probably depend a lot on what is your objective!