Operating system: macOS Catalina Slicer version: none Expected behavior: Output a volume in Nifti format Actual behavior: none Hi there, I am new to 3D slicer and was wondering if it’s N4ITK Bias Field Correction module accepted Nifti image files as input. More specifically I plan to run this mo…

Yes, Slicer can read MRI from a Nifti file, apply bias correction, and save result as Nifti file.

Great! Check out Slicer’s visualization and processing capabilities, too. We also have a FreeSurfer extension that can import data sets. There are tons of tools that fsleyes does not have - from virtual reality tractography to real-time surgical navigation with BrainLab/StealthStation/custom tracker…

N4ITK MRI Bias Field Correction input file type?

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sgonzalez122 (Stephen Gonzalez) August 16, 2020, 8:12pm 3

Thank you so much
I was able to run it successfully, via command line, generate the bias field, and view it in FSL. It looks wonderful.

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N4ITK MRI Bias Field Correction input file type?

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