Hi everyone! I’m interested in developing a liver segmentation extension enabled by self-supervised learning (Vision Transformer as the backbone structure) for 3D slicer. I’m still fine-tuning the model and it is now able to achieve a dice score as high as 0.95 on the validation dataset. Does my plan sounds reasonable to you? I would appreciate any suggestions from the community
That sounds fantastic! @LingFeng I have a team working on liver resection and ablation applications. We are currently working on our first release for a liver resection planning extension. We are also looking into segmentation.
Unfortunately I will not be available to participate during the project week.
I can most certainly make some time to discuss what we did in our extension and how we could work together moving forward.
I will also forward the invitation to the other members of the RVesselX project. Hopefully some will be available to participate for the NA-MIC week
@LingFeng and @RafaelPalomar regarding the liver segmentation using machine learning, we have added an extra segment editor effect which does just that to our extension.
The code for the extension is accessible here :
The specifics of the ML model and the associated Slicer integration is available here :
On our end, we used a UNET model implemented using MONAI and trained on the Medical Decathlon and IRCAD dataset for CT volumes reaching DICE scores of about .95 as well.