Nice leg dataset - could be used for atlas

Here’s a nrrd file of a CT leg at nice resolution (.7 x .7 x .3 mm) voxels.

The link above is just the left leg, but both legs and more pelvic anatomy is available in the original DICOM data. It is shared under a CC-by attribution license and the original is on TCIA. Be sure to cite the data source if you use it.

The data is for subject TCGA-CV-A6JU in the TCGA-HNSC collection.

Looks nice thanks @pieper . This is the collection right? TCIA Collections - The Cancer Imaging Archive (TCIA)

Yes, this one specifically. Be sure to cite it if you use the data in any publications.

hi , i have downloaded your file in .nrrd format and looked at the image in slicer. it’s amazing. if I want to cite it, I just need to cite the TCGA-HNSC collection as a whole or do I need to cite the specific patient as well?

also, I tried to download the file from the cancer research website, do you use this one?
TCGA-HNSC> TCGA-CV-A6JU > 03 feb 2001 data set > CTA LOWER EXTREM W&W/O > SCOUT.

I know its quite late but I’m doing a force distribution fea on knee. i would appreciate if you can reply so I can cite this as healthy knee.

Glad the data is useful for you. I believe it’s enough to cite these two papers. We don’t know who the patient is, but also mentioning the subject ID is good (TCGA-CV-A6JU).

Zuley, M. L., Jarosz, R., Kirk, S., Lee, Y., Colen, R., Garcia, K., … Aredes, N. D. (2016). Radiology Data from The Cancer Genome Atlas Head-Neck Squamous Cell Carcinoma [TCGA-HNSC] collection. The Cancer Imaging Archive.

Clark K, Vendt B, Smith K, Freymann J, Kirby J, Koppel P, Moore S, Phillips S, Maffitt D, Pringle M, Tarbox L, Prior F. The Cancer Imaging Archive (TCIA): Maintaining and Operating a Public Information Repository, Journal of Digital Imaging, Volume 26, Number 6, December, 2013, pp 1045-1057. (paper)

It’s not the scout image, but it’s another series with 3000 slices and starts about the waist and includes both legs.

im trying to create a 3d volume out of it, but the threshold doesn’t select the whole bone. when i satisfied with a threshhold it has other debree around it which i wont want. ofc i can remove it but it will take ages any working around it?

Have a look at the WrapSolidify tool and related discussions.