nnUNET failed to load segmentation in DentalSegmentator & totalSegmentator

chz31 · June 16, 2025, 8:22pm

I am using Ubuntu 22.04 and Slicer 5.9.0. The DentalSegmentator showed “failed to load segmentation; something is wrong with nnUnet processing”

Here is the error log:

[DEBUG][Qt] 16.06.2025 15:08:12 [] (unknown:0) - Session start time .......: 20250616_150812
[DEBUG][Qt] 16.06.2025 15:08:12 [] (unknown:0) - Slicer version ...........: 5.9.0-2025-06-14 (revision 33686 / 7a97a67) linux-amd64 - installed release
[DEBUG][Qt] 16.06.2025 15:08:12 [] (unknown:0) - Operating system .........: Linux / 6.8.0-60-generic / #63~22.04.1-Ubuntu SMP PREEMPT_DYNAMIC Tue Apr 22 19:00:15 UTC 2 / UTF-8 - 64-bit
[DEBUG][Qt] 16.06.2025 15:08:12 [] (unknown:0) - Memory ...................: 256950 MB physical, 2047 MB virtual
[DEBUG][Qt] 16.06.2025 15:08:12 [] (unknown:0) - CPU ......................: GenuineIntel Intel(R) Xeon(R) w9-3575X, 44 cores, 88 logical processors
[DEBUG][Qt] 16.06.2025 15:08:12 [] (unknown:0) - VTK configuration ........: OpenGL2 rendering, TBB threading
[DEBUG][Qt] 16.06.2025 15:08:12 [] (unknown:0) - Qt configuration .........: version 5.15.2, with SSL, requested OpenGL 3.2 (core profile)
[DEBUG][Qt] 16.06.2025 15:08:12 [] (unknown:0) - DCMTK configuration ......: version 3.6.8, no SSL
[DEBUG][Qt] 16.06.2025 15:08:12 [] (unknown:0) - Internationalization .....: disabled, language=
[DEBUG][Qt] 16.06.2025 15:08:12 [] (unknown:0) - Developer mode ...........: enabled
[DEBUG][Qt] 16.06.2025 15:08:12 [] (unknown:0) - Application path .........: /home/zhang/Slicer-5.9.0-2025-06-14-linux-amd64/bin
[DEBUG][Qt] 16.06.2025 15:08:12 [] (unknown:0) - Additional module paths ..: slicer.org/Extensions-33686/NNUNet/lib/Slicer-5.9/qt-scripted-modules, slicer.org/Extensions-33686/PyTorch/lib/Slicer-5.9/qt-scripted-modules, slicer.org/Extensions-33686/DentalSegmentator/lib/Slicer-5.9/qt-scripted-modules, slicer.org/Extensions-33686/SlicerPythonTestRunner/lib/Slicer-5.9/qt-scripted-modules
[DEBUG][Python] 16.06.2025 15:08:15 [Python] (/home/zhang/Slicer-5.9.0-2025-06-14-linux-amd64/lib/Slicer-5.9/qt-scripted-modules/SubjectHierarchyPlugins/AbstractScriptedSubjectHierarchyPlugin.py:40) - Scripted subject hierarchy plugin registered: SegmentEditor
[DEBUG][Python] 16.06.2025 15:08:15 [Python] (/home/zhang/Slicer-5.9.0-2025-06-14-linux-amd64/lib/Slicer-5.9/qt-scripted-modules/SubjectHierarchyPlugins/AbstractScriptedSubjectHierarchyPlugin.py:40) - Scripted subject hierarchy plugin registered: SegmentStatistics
[DEBUG][Qt] 16.06.2025 15:08:15 [] (unknown:0) - Switch to module:  "Welcome"
[DEBUG][Qt] 16.06.2025 15:08:24 [] (unknown:0) - Switch to module:  "PyTorchUtils"
[DEBUG][Qt] 16.06.2025 15:08:33 [] (unknown:0) - Switch to module:  "DentalSegmentator"
[DEBUG][Qt] 16.06.2025 15:08:39 [] (unknown:0) - Switch to module:  "SampleData"
[DEBUG][Python] 16.06.2025 15:08:41 [Python] (/home/zhang/Slicer-5.9.0-2025-06-14-linux-amd64/bin/../lib/Slicer-5.9/qt-scripted-modules/SampleData.py:408) - Verifying checksum
[DEBUG][Python] 16.06.2025 15:08:41 [Python] (/home/zhang/Slicer-5.9.0-2025-06-14-linux-amd64/bin/../lib/Slicer-5.9/qt-scripted-modules/SampleData.py:408) - File already exists and checksum is OK - reusing it.
[DEBUG][Python] 16.06.2025 15:08:41 [Python] (/home/zhang/Slicer-5.9.0-2025-06-14-linux-amd64/bin/../lib/Slicer-5.9/qt-scripted-modules/SampleData.py:408) - Requesting load PreDentalSurgery from /home/zhang/.cache/slicer.org/Slicer/SlicerIO/PreDentalSurgery.gipl.gz ...
[DEBUG][Qt] 16.06.2025 15:08:41 [] (unknown:0) - "Volume" Reader has successfully read the file "/home/zhang/.cache/slicer.org/Slicer/SlicerIO/PreDentalSurgery.gipl.gz" "[0.34s]"
[DEBUG][Python] 16.06.2025 15:08:41 [Python] (/home/zhang/Slicer-5.9.0-2025-06-14-linux-amd64/bin/../lib/Slicer-5.9/qt-scripted-modules/SampleData.py:408) - Load finished
[DEBUG][Python] 16.06.2025 15:08:41 [Python] (/home/zhang/Slicer-5.9.0-2025-06-14-linux-amd64/bin/../lib/Slicer-5.9/qt-scripted-modules/SampleData.py:408) - Verifying checksum
[DEBUG][Python] 16.06.2025 15:08:41 [Python] (/home/zhang/Slicer-5.9.0-2025-06-14-linux-amd64/bin/../lib/Slicer-5.9/qt-scripted-modules/SampleData.py:408) - File already exists and checksum is OK - reusing it.
[DEBUG][Python] 16.06.2025 15:08:41 [Python] (/home/zhang/Slicer-5.9.0-2025-06-14-linux-amd64/bin/../lib/Slicer-5.9/qt-scripted-modules/SampleData.py:408) - Requesting load PostDentalSurgery from /home/zhang/.cache/slicer.org/Slicer/SlicerIO/PostDentalSurgery.gipl.gz ...
[DEBUG][Qt] 16.06.2025 15:08:42 [] (unknown:0) - "Volume" Reader has successfully read the file "/home/zhang/.cache/slicer.org/Slicer/SlicerIO/PostDentalSurgery.gipl.gz" "[0.35s]"
[DEBUG][Python] 16.06.2025 15:08:42 [Python] (/home/zhang/Slicer-5.9.0-2025-06-14-linux-amd64/bin/../lib/Slicer-5.9/qt-scripted-modules/SampleData.py:408) - Load finished
[DEBUG][Qt] 16.06.2025 15:08:46 [] (unknown:0) - Switch to module:  "DentalSegmentator"
[INFO][Python] 16.06.2025 15:08:50 [Python] (/home/zhang/Slicer-5.9.0-2025-06-14-linux-amd64/slicer.org/Extensions-33686/NNUNet/lib/Slicer-5.9/qt-scripted-modules/SlicerNNUNetLib/InstallLogic.py:56) - nnUNet is already installed (2.6.2) and compatible with requested version (nnunetv2).
[DEBUG][Python] 16.06.2025 15:08:50 [Python] (/home/zhang/Slicer-5.9.0-2025-06-14-linux-amd64/lib/Python/lib/python3.12/site-packages/urllib3/connectionpool.py:1049) - Starting new HTTPS connection (1): www.google.com:443
[DEBUG][Python] 16.06.2025 15:08:50 [Python] (/home/zhang/Slicer-5.9.0-2025-06-14-linux-amd64/lib/Python/lib/python3.12/site-packages/urllib3/connectionpool.py:544) - https://www.google.com:443 "GET / HTTP/1.1" 200 None
[DEBUG][Python] 16.06.2025 15:08:50 [Python] (/home/zhang/Slicer-5.9.0-2025-06-14-linux-amd64/lib/Python/lib/python3.12/site-packages/urllib3/connectionpool.py:1049) - Starting new HTTPS connection (1): api.github.com:443
[DEBUG][Python] 16.06.2025 15:08:50 [Python] (/home/zhang/Slicer-5.9.0-2025-06-14-linux-amd64/lib/Python/lib/python3.12/site-packages/urllib3/connectionpool.py:544) - https://api.github.com:443 "GET /repos/gaudot/SlicerDentalSegmentator HTTP/1.1" 200 1477
[DEBUG][Python] 16.06.2025 15:08:50 [Python] (/home/zhang/Slicer-5.9.0-2025-06-14-linux-amd64/lib/Python/lib/python3.12/site-packages/urllib3/connectionpool.py:1049) - Starting new HTTPS connection (1): api.github.com:443
[DEBUG][Python] 16.06.2025 15:08:50 [Python] (/home/zhang/Slicer-5.9.0-2025-06-14-linux-amd64/lib/Python/lib/python3.12/site-packages/urllib3/connectionpool.py:544) - https://api.github.com:443 "GET /repos/gaudot/SlicerDentalSegmentator/releases HTTP/1.1" 200 817
[DEBUG][Python] 16.06.2025 15:08:51 [Python] (/home/zhang/Slicer-5.9.0-2025-06-14-linux-amd64/lib/Python/lib/python3.12/site-packages/urllib3/connectionpool.py:1049) - Starting new HTTPS connection (1): api.github.com:443
[DEBUG][Python] 16.06.2025 15:08:51 [Python] (/home/zhang/Slicer-5.9.0-2025-06-14-linux-amd64/lib/Python/lib/python3.12/site-packages/urllib3/connectionpool.py:544) - https://api.github.com:443 "GET /repos/gaudot/SlicerDentalSegmentator/releases/147040025/assets HTTP/1.1" 200 603
[ERROR][Python] 16.06.2025 15:08:54 [Python] (/home/zhang/Slicer-5.9.0-2025-06-14-linux-amd64/bin/Python/slicer/util.py:3146) - Failed to load the segmentation.
Something went wrong during the nnUNet processing.
Please check the logs for potential errors and contact the library maintainers.

The pytorch util showed pytorch properly installed:

I also tried totalSegmentator, which showed below errors:

Traceback (most recent call last):
  File "/home/zhang/Slicer-5.9.0-2025-06-14-linux-amd64/bin/Python/slicer/util.py", line 3392, in tryWithErrorDisplay
    yield
  File "/home/zhang/Slicer-5.9.0-2025-06-14-linux-amd64/slicer.org/Extensions-33686/TotalSegmentator/lib/Slicer-5.9/qt-scripted-modules/TotalSegmentator.py", line 307, in onApplyButton
    self.logic.process(self.ui.inputVolumeSelector.currentNode(), self.ui.outputSegmentationSelector.currentNode(),
  File "/home/zhang/Slicer-5.9.0-2025-06-14-linux-amd64/slicer.org/Extensions-33686/TotalSegmentator/lib/Slicer-5.9/qt-scripted-modules/TotalSegmentator.py", line 1046, in process
    self.processVolume(inputFile, inputVolume,
  File "/home/zhang/Slicer-5.9.0-2025-06-14-linux-amd64/slicer.org/Extensions-33686/TotalSegmentator/lib/Slicer-5.9/qt-scripted-modules/TotalSegmentator.py", line 1113, in processVolume
    self.logProcessOutput(proc)
  File "/home/zhang/Slicer-5.9.0-2025-06-14-linux-amd64/slicer.org/Extensions-33686/TotalSegmentator/lib/Slicer-5.9/qt-scripted-modules/TotalSegmentator.py", line 892, in logProcessOutput
    raise CalledProcessError(retcode, proc.args, output=proc.stdout, stderr=proc.stderr)
subprocess.CalledProcessError: Command '['/home/zhang/Slicer-5.9.0-2025-06-14-linux-amd64/bin/../bin/PythonSlicer', '/home/zhang/Slicer-5.9.0-2025-06-14-linux-amd64/lib/Python/bin/TotalSegmentator', '-i', '/tmp/Slicer-zhang/__SlicerTemp__2025-06-16_15+19+33.235/total-segmentator-input.nii', '-o', '/tmp/Slicer-zhang/__SlicerTemp__2025-06-16_15+19+33.235/segmentation', '--ml', '--task', 'total']' returned non-zero exit status 1.

chz31 · June 16, 2025, 8:36pm

I am not sure if it is my Ubuntu system’s problem. I used PythonSlicer -m pip install to install pytorch. If I used DentalSegmentator to install pytorch within a freshly installed Slicer 5.9.0, it reported below error when installing numexpr:

Collecting numexpr
  Using cached numexpr-2.11.0.tar.gz (108 kB)
  Installing build dependencies: started
  Installing build dependencies: finished with status 'error'
  error: subprocess-exited-with-error

  × pip subprocess to install build dependencies did not run successfully.
  │ exit code: 1
  ╰─> [51 lines of output]
      Collecting setuptools
        Using cached setuptools-80.9.0-py3-none-any.whl.metadata (6.6 kB)
      Collecting wheel
        Using cached wheel-0.45.1-py3-none-any.whl.metadata (2.3 kB)
      Collecting numpy>=2.0.0
        Using cached numpy-2.3.0.tar.gz (20.4 MB)
        Installing build dependencies: started
        Installing build dependencies: finished with status 'done'
        Getting requirements to build wheel: started
        Getting requirements to build wheel: finished with status 'done'
        Installing backend dependencies: started
        Installing backend dependencies: finished with status 'done'
        Preparing metadata (pyproject.toml): started
        Preparing metadata (pyproject.toml): finished with status 'error'
        error: subprocess-exited-with-error

        × Preparing metadata (pyproject.toml) did not run successfully.
        │ exit code: 1
        ╰─> [22 lines of output]
            + /home/zhang/Slicer-5.9.0-2025-06-14-linux-amd64/bin/python-real /tmp/pip-install-y22nmtxm/numpy_51d4d08f7ec641d1a235f64003b012f1/vendored-meson/meson/meson.py setup /tmp/pip-install-y22nmtxm/numpy_51d4d08f7ec641d1a235f64003b012f1 /tmp/pip-install-y22nmtxm/numpy_51d4d08f7ec641d1a235f64003b012f1/.mesonpy-kqkrx0ha -Dbuildtype=release -Db_ndebug=if-release -Db_vscrt=md --native-file=/tmp/pip-install-y22nmtxm/numpy_51d4d08f7ec641d1a235f64003b012f1/.mesonpy-kqkrx0ha/meson-python-native-file.ini
            The Meson build system
            Version: 1.6.1
            Source dir: /tmp/pip-install-y22nmtxm/numpy_51d4d08f7ec641d1a235f64003b012f1
            Build dir: /tmp/pip-install-y22nmtxm/numpy_51d4d08f7ec641d1a235f64003b012f1/.mesonpy-kqkrx0ha
            Build type: native build
            Project name: NumPy
            Project version: 2.3.0
            C compiler for the host machine: cc (gcc 11.4.0 "cc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0")
            C linker for the host machine: cc ld.bfd 2.38
            C++ compiler for the host machine: c++ (gcc 11.4.0 "c++ (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0")
            C++ linker for the host machine: c++ ld.bfd 2.38
            Cython compiler for the host machine: cython (cython 3.1.2)
            Host machine cpu family: x86_64
            Host machine cpu: x86_64
            Program python found: YES (/home/zhang/Slicer-5.9.0-2025-06-14-linux-amd64/bin/python-real)
            Found pkg-config: YES (/usr/bin/pkg-config) 0.29.2
            Run-time dependency python found: NO (tried pkgconfig, pkgconfig and sysconfig)

            ../meson.build:41:12: ERROR: Python dependency not found

            A full log can be found at /tmp/pip-install-y22nmtxm/numpy_51d4d08f7ec641d1a235f64003b012f1/.mesonpy-kqkrx0ha/meson-logs/meson-log.txt
            [end of output]

        note: This error originates from a subprocess, and is likely not a problem with pip.
      error: metadata-generation-failed

      × Encountered error while generating package metadata.
      ╰─> See above for output.

      note: This is an issue with the package mentioned above, not pip.
      hint: See above for details.
      [end of output]

  note: This error originates from a subprocess, and is likely not a problem with pip.
error: subprocess-exited-with-error

× pip subprocess to install build dependencies did not run successfully.
│ exit code: 1
╰─> See above for output.

note: This error originates from a subprocess, and is likely not a problem with pip.

The Pytorch Util also showed nothing, including not recognizing nvidia driver:

If I reinstall Pytorch via Pytorch Util, it recognized Nvidia driver and showed torch corrupted, which shouldn’t be a big probalem:

However, Dental Segmentator showed the same error as in the original post.

Reinstall pytorch using PythonSlicer -m pip install will fix the torch corruption issue but still showed the same error as the original post.

CPU mode in DentalSegmentator and TotalSegmentator also showed the same error as the original post.

chz31 · June 16, 2025, 8:57pm

I think it is probably the version issue of the newest Slicer 5.9.0. Both Dental- and TotalSegmentator still worked with Pytorch-gpu in the most recent stable Slicer 5.8.1

jamesobutler · June 16, 2025, 9:44pm

It appears to be trying to build the numexpr package from source because the whl available is numexpr-2.11.0-cp312-cp312-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl which is too new of a glibc for what the Slicer Linux package is based off.

See the following about upcoming work to allow install of whls that are of newer manylinux_2_28 types:

github.com/Slicer/Slicer

Request for PyTorch 2.7 Support in 3D Slicer for NVIDIA Blackwell GPUs

opened 05:00PM - 05 Jun 25 UTC

rodrigoteixeira7

Request for PyTorch 2.7 Support in 3D Slicer for NVIDIA Blackwell GPUs System I…nformation: - GPU: NVIDIA GeForce RTX 5070 Ti - Architecture: NVIDIA Blackwell - OS: Linux Unbutu 24.04.2 LTS PyTorch version 2.7 introduces support for the Blackwell architecture, which is required for compatibility with this GPU. Earlier versions of PyTorch (≤2.6) do not support it, resulting in the following error: - “The current PyTorch install supports CUDA capabilities sm_50 sm_60 sm_70 sm_75 sm_80 sm_86 sm_90.” Unfortunately, the PyTorch version currently available in 3D Slicer is limited to 2.6 xref https://discourse.slicer.org/t/pytorch-cuda-incompatibility-with-nvidia-rtx-5070-ti/43233

For now I would suggest trying these Slicer extensions on Windows or macOS.

chz31 · June 17, 2025, 2:20pm

Thanks for the clarification. On Windows, I got the same errors for the newest Slicer 5.9.0.

jamesobutler · June 17, 2025, 2:48pm

Can you post the error you observed on Windows? It was the same issue building the numexpr package? Or was it a different issue?

chz31 · June 17, 2025, 6:41pm

No, it did not report the numexpr installation error. The auto pytorch installation via DentalSegmentator in a freshly install Slicer 5.9.0 was OK. I suspected it might be related to nnUnet. In Linux, after I manually installed pytorch, I got the same errors when running Dental- and TotalSegmentator.

In Dental Segmentator, the same error reported for loading the segmentations when I run auto-segmentation:

[Python] Failed to load the segmentation.
[Python] Something went wrong during the nnUNet processing.
[Python] Please check the logs for potential errors and contact the library maintainers.

Here is the full log:

[DEBUG][Qt] 17.06.2025 13:26:34 [] (unknown:0) - Session start time .......: 20250617_132634
[DEBUG][Qt] 17.06.2025 13:26:34 [] (unknown:0) - Slicer version ...........: 5.9.0-2025-06-14 (revision 33686 / 7a97a67) win-amd64 - installed release
[DEBUG][Qt] 17.06.2025 13:26:35 [] (unknown:0) - Operating system .........: Windows /  Professional / (Build 22631, Code Page 65001) - 64-bit
[DEBUG][Qt] 17.06.2025 13:26:35 [] (unknown:0) - Memory ...................: 64980 MB physical, 74708 MB virtual
[DEBUG][Qt] 17.06.2025 13:26:35 [] (unknown:0) - CPU ......................: GenuineIntel , 22 cores, 22 logical processors
[DEBUG][Qt] 17.06.2025 13:26:35 [] (unknown:0) - VTK configuration ........: OpenGL2 rendering, TBB threading
[DEBUG][Qt] 17.06.2025 13:26:35 [] (unknown:0) - Qt configuration .........: version 5.15.2, with SSL, requested OpenGL 3.2 (compatibility profile)
[DEBUG][Qt] 17.06.2025 13:26:35 [] (unknown:0) - DCMTK configuration ......: version 3.6.8, no SSL
[DEBUG][Qt] 17.06.2025 13:26:35 [] (unknown:0) - Internationalization .....: disabled, language=
[DEBUG][Qt] 17.06.2025 13:26:35 [] (unknown:0) - Developer mode ...........: enabled
[DEBUG][Qt] 17.06.2025 13:26:35 [] (unknown:0) - Application path .........: C:/Users/chi.zhang/AppData/Local/slicer.org/Slicer 5.9.0-2025-06-14/bin
[DEBUG][Qt] 17.06.2025 13:26:35 [] (unknown:0) - Additional module paths ..: slicer.org/Extensions-33686/NNUNet/lib/Slicer-5.9/qt-scripted-modules, slicer.org/Extensions-33686/PyTorch/lib/Slicer-5.9/qt-scripted-modules, slicer.org/Extensions-33686/DentalSegmentator/lib/Slicer-5.9/qt-scripted-modules, slicer.org/Extensions-33686/SlicerPythonTestRunner/lib/Slicer-5.9/qt-scripted-modules
[DEBUG][Python] 17.06.2025 13:26:37 [Python] (C:\Users\chi.zhang\AppData\Local\slicer.org\Slicer 5.9.0-2025-06-14\lib\Slicer-5.9\qt-scripted-modules\SubjectHierarchyPlugins\AbstractScriptedSubjectHierarchyPlugin.py:40) - Scripted subject hierarchy plugin registered: SegmentEditor
[DEBUG][Python] 17.06.2025 13:26:37 [Python] (C:\Users\chi.zhang\AppData\Local\slicer.org\Slicer 5.9.0-2025-06-14\lib\Slicer-5.9\qt-scripted-modules\SubjectHierarchyPlugins\AbstractScriptedSubjectHierarchyPlugin.py:40) - Scripted subject hierarchy plugin registered: SegmentStatistics
[DEBUG][Qt] 17.06.2025 13:26:37 [] (unknown:0) - Switch to module:  "Welcome"
[DEBUG][Qt] 17.06.2025 13:26:50 [] (unknown:0) - Switch to module:  "SampleData"
[DEBUG][Python] 17.06.2025 13:26:54 [Python] (C:/Users/chi.zhang/AppData/Local/slicer.org/Slicer 5.9.0-2025-06-14/bin/../lib/Slicer-5.9/qt-scripted-modules/SampleData.py:408) - Verifying checksum
[DEBUG][Python] 17.06.2025 13:26:54 [Python] (C:/Users/chi.zhang/AppData/Local/slicer.org/Slicer 5.9.0-2025-06-14/bin/../lib/Slicer-5.9/qt-scripted-modules/SampleData.py:408) - File already exists and checksum is OK - reusing it.
[DEBUG][Python] 17.06.2025 13:26:54 [Python] (C:/Users/chi.zhang/AppData/Local/slicer.org/Slicer 5.9.0-2025-06-14/bin/../lib/Slicer-5.9/qt-scripted-modules/SampleData.py:408) - Requesting load PreDentalSurgery from C:/Users/chi.zhang/AppData/Local/slicer.org/Slicer/cache/SlicerIO/PreDentalSurgery.gipl.gz ...
[DEBUG][Qt] 17.06.2025 13:26:55 [] (unknown:0) - "Volume" Reader has successfully read the file "C:/Users/chi.zhang/AppData/Local/slicer.org/Slicer/cache/SlicerIO/PreDentalSurgery.gipl.gz" "[0.30s]"
[DEBUG][Python] 17.06.2025 13:26:55 [Python] (C:/Users/chi.zhang/AppData/Local/slicer.org/Slicer 5.9.0-2025-06-14/bin/../lib/Slicer-5.9/qt-scripted-modules/SampleData.py:408) - Load finished
[DEBUG][Python] 17.06.2025 13:26:55 [Python] (C:/Users/chi.zhang/AppData/Local/slicer.org/Slicer 5.9.0-2025-06-14/bin/../lib/Slicer-5.9/qt-scripted-modules/SampleData.py:408) - Verifying checksum
[DEBUG][Python] 17.06.2025 13:26:55 [Python] (C:/Users/chi.zhang/AppData/Local/slicer.org/Slicer 5.9.0-2025-06-14/bin/../lib/Slicer-5.9/qt-scripted-modules/SampleData.py:408) - File already exists and checksum is OK - reusing it.
[DEBUG][Python] 17.06.2025 13:26:55 [Python] (C:/Users/chi.zhang/AppData/Local/slicer.org/Slicer 5.9.0-2025-06-14/bin/../lib/Slicer-5.9/qt-scripted-modules/SampleData.py:408) - Requesting load PostDentalSurgery from C:/Users/chi.zhang/AppData/Local/slicer.org/Slicer/cache/SlicerIO/PostDentalSurgery.gipl.gz ...
[DEBUG][Qt] 17.06.2025 13:26:55 [] (unknown:0) - "Volume" Reader has successfully read the file "C:/Users/chi.zhang/AppData/Local/slicer.org/Slicer/cache/SlicerIO/PostDentalSurgery.gipl.gz" "[0.32s]"
[DEBUG][Python] 17.06.2025 13:26:55 [Python] (C:/Users/chi.zhang/AppData/Local/slicer.org/Slicer 5.9.0-2025-06-14/bin/../lib/Slicer-5.9/qt-scripted-modules/SampleData.py:408) - Load finished
[DEBUG][Qt] 17.06.2025 13:26:57 [] (unknown:0) - Switch to module:  "Welcome"
[DEBUG][Qt] 17.06.2025 13:27:05 [] (unknown:0) - Switch to module:  "DentalSegmentator"
[CRITICAL][Qt] 17.06.2025 13:27:05 [] (unknown:0) - void __cdecl qMRMLSegmentEditorWidget::setSourceVolumeNode(class vtkMRMLNode *)  failed: need to set segment editor and segmentation nodes first
[INFO][Python] 17.06.2025 13:27:11 [Python] (C:\Users\chi.zhang\AppData\Local\slicer.org\Slicer 5.9.0-2025-06-14\slicer.org\Extensions-33686\NNUNet\lib\Slicer-5.9\qt-scripted-modules\SlicerNNUNetLib\InstallLogic.py:56) - Start nnUNet install with requirements : nnunetv2
[INFO][Python] 17.06.2025 13:27:11 [Python] (C:\Users\chi.zhang\AppData\Local\slicer.org\Slicer 5.9.0-2025-06-14\slicer.org\Extensions-33686\NNUNet\lib\Slicer-5.9\qt-scripted-modules\SlicerNNUNetLib\InstallLogic.py:56) - - Installing nnunetv2 --no-deps...
[INFO][Stream] 17.06.2025 13:27:13 [] (unknown:0) - Collecting nnunetv2
[INFO][Stream] 17.06.2025 13:27:13 [] (unknown:0) -   Using cached nnunetv2-2.6.2-py3-none-any.whl
[INFO][Stream] 17.06.2025 13:27:13 [] (unknown:0) - Installing collected packages: nnunetv2
[INFO][Stream] 17.06.2025 13:27:14 [] (unknown:0) - Successfully installed nnunetv2-2.6.2
[INFO][Python] 17.06.2025 13:27:14 [Python] (C:\Users\chi.zhang\AppData\Local\slicer.org\Slicer 5.9.0-2025-06-14\slicer.org\Extensions-33686\NNUNet\lib\Slicer-5.9\qt-scripted-modules\SlicerNNUNetLib\InstallLogic.py:56) - - Installing dynamic-network-architectures<0.5,>=0.4.1 --no-deps...
[INFO][Stream] 17.06.2025 13:27:15 [] (unknown:0) - Collecting dynamic-network-architectures<0.5,>=0.4.1
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[INFO][Stream] 17.06.2025 13:27:15 [] (unknown:0) - Installing collected packages: dynamic-network-architectures
[INFO][Stream] 17.06.2025 13:27:15 [] (unknown:0) - Successfully installed dynamic-network-architectures-0.4.2
[INFO][Python] 17.06.2025 13:27:15 [Python] (C:\Users\chi.zhang\AppData\Local\slicer.org\Slicer 5.9.0-2025-06-14\slicer.org\Extensions-33686\NNUNet\lib\Slicer-5.9\qt-scripted-modules\SlicerNNUNetLib\InstallLogic.py:56) - - Installing timm --no-deps...
[INFO][Stream] 17.06.2025 13:27:16 [] (unknown:0) - Collecting timm
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[INFO][Stream] 17.06.2025 13:27:16 [] (unknown:0) - Installing collected packages: timm
[INFO][Stream] 17.06.2025 13:27:17 [] (unknown:0) - Successfully installed timm-1.0.15
[INFO][Python] 17.06.2025 13:27:17 [Python] (C:\Users\chi.zhang\AppData\Local\slicer.org\Slicer 5.9.0-2025-06-14\slicer.org\Extensions-33686\NNUNet\lib\Slicer-5.9\qt-scripted-modules\SlicerNNUNetLib\InstallLogic.py:56) - - Installing pyyaml --no-deps...
[INFO][Stream] 17.06.2025 13:27:18 [] (unknown:0) - Collecting pyyaml
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[INFO][Stream] 17.06.2025 13:27:18 [] (unknown:0) - Installing collected packages: pyyaml
[INFO][Stream] 17.06.2025 13:27:18 [] (unknown:0) - Successfully installed pyyaml-6.0.2
[INFO][Python] 17.06.2025 13:27:18 [Python] (C:\Users\chi.zhang\AppData\Local\slicer.org\Slicer 5.9.0-2025-06-14\slicer.org\Extensions-33686\NNUNet\lib\Slicer-5.9\qt-scripted-modules\SlicerNNUNetLib\InstallLogic.py:56) - - Installing huggingface_hub --no-deps...
[INFO][Stream] 17.06.2025 13:27:19 [] (unknown:0) - Collecting huggingface_hub
[INFO][Stream] 17.06.2025 13:27:19 [] (unknown:0) -   Using cached huggingface_hub-0.33.0-py3-none-any.whl.metadata (14 kB)
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[INFO][Stream] 17.06.2025 13:27:19 [] (unknown:0) - Installing collected packages: huggingface_hub
[INFO][Stream] 17.06.2025 13:27:20 [] (unknown:0) - Successfully installed huggingface_hub-0.33.0
[INFO][Python] 17.06.2025 13:27:20 [Python] (C:\Users\chi.zhang\AppData\Local\slicer.org\Slicer 5.9.0-2025-06-14\slicer.org\Extensions-33686\NNUNet\lib\Slicer-5.9\qt-scripted-modules\SlicerNNUNetLib\InstallLogic.py:56) - - Installing filelock --no-deps...
[INFO][Stream] 17.06.2025 13:27:21 [] (unknown:0) - Collecting filelock
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[INFO][Stream] 17.06.2025 13:27:21 [] (unknown:0) - Installing collected packages: filelock
[INFO][Stream] 17.06.2025 13:27:21 [] (unknown:0) - Successfully installed filelock-3.18.0
[INFO][Python] 17.06.2025 13:27:21 [Python] (C:\Users\chi.zhang\AppData\Local\slicer.org\Slicer 5.9.0-2025-06-14\slicer.org\Extensions-33686\NNUNet\lib\Slicer-5.9\qt-scripted-modules\SlicerNNUNetLib\InstallLogic.py:56) - - Installing fsspec>=2023.5.0 --no-deps...
[INFO][Stream] 17.06.2025 13:27:22 [] (unknown:0) - Collecting fsspec>=2023.5.0
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[INFO][Stream] 17.06.2025 13:27:22 [] (unknown:0) - Installing collected packages: fsspec
[INFO][Stream] 17.06.2025 13:27:22 [] (unknown:0) - Successfully installed fsspec-2025.5.1
[INFO][Python] 17.06.2025 13:27:22 [Python] (C:\Users\chi.zhang\AppData\Local\slicer.org\Slicer 5.9.0-2025-06-14\slicer.org\Extensions-33686\NNUNet\lib\Slicer-5.9\qt-scripted-modules\SlicerNNUNetLib\InstallLogic.py:56) - - Installing tqdm>=4.42.1 --no-deps...
[INFO][Stream] 17.06.2025 13:27:23 [] (unknown:0) - Collecting tqdm>=4.42.1
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[INFO][Stream] 17.06.2025 13:27:23 [] (unknown:0) - Installing collected packages: tqdm
[INFO][Stream] 17.06.2025 13:27:23 [] (unknown:0) - Successfully installed tqdm-4.67.1
[INFO][Python] 17.06.2025 13:27:23 [Python] (C:\Users\chi.zhang\AppData\Local\slicer.org\Slicer 5.9.0-2025-06-14\slicer.org\Extensions-33686\NNUNet\lib\Slicer-5.9\qt-scripted-modules\SlicerNNUNetLib\InstallLogic.py:56) - - Installing colorama --no-deps...
[INFO][Stream] 17.06.2025 13:27:24 [] (unknown:0) - Collecting colorama
[INFO][Stream] 17.06.2025 13:27:24 [] (unknown:0) -   Using cached colorama-0.4.6-py2.py3-none-any.whl.metadata (17 kB)
[INFO][Stream] 17.06.2025 13:27:24 [] (unknown:0) - Using cached colorama-0.4.6-py2.py3-none-any.whl (25 kB)
[INFO][Stream] 17.06.2025 13:27:24 [] (unknown:0) - Installing collected packages: colorama
[INFO][Stream] 17.06.2025 13:27:24 [] (unknown:0) - Successfully installed colorama-0.4.6
[INFO][Python] 17.06.2025 13:27:24 [Python] (C:\Users\chi.zhang\AppData\Local\slicer.org\Slicer 5.9.0-2025-06-14\slicer.org\Extensions-33686\NNUNet\lib\Slicer-5.9\qt-scripted-modules\SlicerNNUNetLib\InstallLogic.py:56) - - Installing safetensors --no-deps...
[INFO][Stream] 17.06.2025 13:27:25 [] (unknown:0) - Collecting safetensors
[INFO][Stream] 17.06.2025 13:27:25 [] (unknown:0) -   Using cached safetensors-0.5.3-cp38-abi3-win_amd64.whl.metadata (3.9 kB)
[INFO][Stream] 17.06.2025 13:27:25 [] (unknown:0) - Using cached safetensors-0.5.3-cp38-abi3-win_amd64.whl (308 kB)
[INFO][Stream] 17.06.2025 13:27:25 [] (unknown:0) - Installing collected packages: safetensors
[INFO][Stream] 17.06.2025 13:27:25 [] (unknown:0) - Successfully installed safetensors-0.5.3
[INFO][Python] 17.06.2025 13:27:25 [Python] (C:\Users\chi.zhang\AppData\Local\slicer.org\Slicer 5.9.0-2025-06-14\slicer.org\Extensions-33686\NNUNet\lib\Slicer-5.9\qt-scripted-modules\SlicerNNUNetLib\InstallLogic.py:56) - - Installing einops --no-deps...
[INFO][Stream] 17.06.2025 13:27:26 [] (unknown:0) - Collecting einops
[INFO][Stream] 17.06.2025 13:27:26 [] (unknown:0) -   Using cached einops-0.8.1-py3-none-any.whl.metadata (13 kB)
[INFO][Stream] 17.06.2025 13:27:26 [] (unknown:0) - Using cached einops-0.8.1-py3-none-any.whl (64 kB)
[INFO][Stream] 17.06.2025 13:27:26 [] (unknown:0) - Installing collected packages: einops
[INFO][Stream] 17.06.2025 13:27:26 [] (unknown:0) - Successfully installed einops-0.8.1
[INFO][Python] 17.06.2025 13:27:26 [Python] (C:\Users\chi.zhang\AppData\Local\slicer.org\Slicer 5.9.0-2025-06-14\slicer.org\Extensions-33686\NNUNet\lib\Slicer-5.9\qt-scripted-modules\SlicerNNUNetLib\InstallLogic.py:56) - - Installing batchgenerators>=0.25.1 --no-deps...
[INFO][Stream] 17.06.2025 13:27:27 [] (unknown:0) - Collecting batchgenerators>=0.25.1
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[INFO][Stream] 17.06.2025 13:27:27 [] (unknown:0) - Installing collected packages: batchgenerators
[INFO][Stream] 17.06.2025 13:27:28 [] (unknown:0) - Successfully installed batchgenerators-0.25.1
[INFO][Python] 17.06.2025 13:27:28 [Python] (C:\Users\chi.zhang\AppData\Local\slicer.org\Slicer 5.9.0-2025-06-14\slicer.org\Extensions-33686\NNUNet\lib\Slicer-5.9\qt-scripted-modules\SlicerNNUNetLib\InstallLogic.py:56) - - Installing scikit-image --no-deps...
[INFO][Stream] 17.06.2025 13:27:28 [] (unknown:0) - Collecting scikit-image
[INFO][Stream] 17.06.2025 13:27:28 [] (unknown:0) -   Using cached scikit_image-0.25.2-cp312-cp312-win_amd64.whl.metadata (14 kB)
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[INFO][Stream] 17.06.2025 13:27:29 [] (unknown:0) - Installing collected packages: scikit-image
[INFO][Stream] 17.06.2025 13:27:30 [] (unknown:0) - Successfully installed scikit-image-0.25.2
[INFO][Python] 17.06.2025 13:27:30 [Python] (C:\Users\chi.zhang\AppData\Local\slicer.org\Slicer 5.9.0-2025-06-14\slicer.org\Extensions-33686\NNUNet\lib\Slicer-5.9\qt-scripted-modules\SlicerNNUNetLib\InstallLogic.py:56) - - Installing networkx>=3.0 --no-deps...
[INFO][Stream] 17.06.2025 13:27:31 [] (unknown:0) - Collecting networkx>=3.0
[INFO][Stream] 17.06.2025 13:27:31 [] (unknown:0) -   Using cached networkx-3.5-py3-none-any.whl.metadata (6.3 kB)
[INFO][Stream] 17.06.2025 13:27:31 [] (unknown:0) - Using cached networkx-3.5-py3-none-any.whl (2.0 MB)
[INFO][Stream] 17.06.2025 13:27:31 [] (unknown:0) - Installing collected packages: networkx
[INFO][Stream] 17.06.2025 13:27:34 [] (unknown:0) - Successfully installed networkx-3.5
[INFO][Python] 17.06.2025 13:27:34 [Python] (C:\Users\chi.zhang\AppData\Local\slicer.org\Slicer 5.9.0-2025-06-14\slicer.org\Extensions-33686\NNUNet\lib\Slicer-5.9\qt-scripted-modules\SlicerNNUNetLib\InstallLogic.py:56) - - Installing imageio!=2.35.0,>=2.33 --no-deps...
[INFO][Stream] 17.06.2025 13:27:35 [] (unknown:0) - Collecting imageio!=2.35.0,>=2.33
[INFO][Stream] 17.06.2025 13:27:35 [] (unknown:0) -   Using cached imageio-2.37.0-py3-none-any.whl.metadata (5.2 kB)
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[INFO][Stream] 17.06.2025 13:27:35 [] (unknown:0) - Installing collected packages: imageio
[INFO][Stream] 17.06.2025 13:27:35 [] (unknown:0) - Successfully installed imageio-2.37.0
[INFO][Python] 17.06.2025 13:27:35 [Python] (C:\Users\chi.zhang\AppData\Local\slicer.org\Slicer 5.9.0-2025-06-14\slicer.org\Extensions-33686\NNUNet\lib\Slicer-5.9\qt-scripted-modules\SlicerNNUNetLib\InstallLogic.py:56) - - Installing tifffile>=2022.8.12 --no-deps...
[INFO][Stream] 17.06.2025 13:27:36 [] (unknown:0) - Collecting tifffile>=2022.8.12
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[INFO][Stream] 17.06.2025 13:27:36 [] (unknown:0) - Installing collected packages: tifffile
[INFO][Stream] 17.06.2025 13:27:36 [] (unknown:0) - Successfully installed tifffile-2025.6.11
[INFO][Python] 17.06.2025 13:27:37 [Python] (C:\Users\chi.zhang\AppData\Local\slicer.org\Slicer 5.9.0-2025-06-14\slicer.org\Extensions-33686\NNUNet\lib\Slicer-5.9\qt-scripted-modules\SlicerNNUNetLib\InstallLogic.py:56) - - Installing lazy-loader>=0.4 --no-deps...
[INFO][Stream] 17.06.2025 13:27:37 [] (unknown:0) - Collecting lazy-loader>=0.4
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[INFO][Stream] 17.06.2025 13:27:37 [] (unknown:0) - Installing collected packages: lazy-loader
[INFO][Stream] 17.06.2025 13:27:37 [] (unknown:0) - Successfully installed lazy-loader-0.4
[INFO][Python] 17.06.2025 13:27:38 [Python] (C:\Users\chi.zhang\AppData\Local\slicer.org\Slicer 5.9.0-2025-06-14\slicer.org\Extensions-33686\NNUNet\lib\Slicer-5.9\qt-scripted-modules\SlicerNNUNetLib\InstallLogic.py:56) - - Installing scikit-learn --no-deps...
[INFO][Stream] 17.06.2025 13:27:39 [] (unknown:0) - Collecting scikit-learn
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[INFO][Stream] 17.06.2025 13:27:39 [] (unknown:0) - Installing collected packages: scikit-learn
[INFO][Stream] 17.06.2025 13:27:42 [] (unknown:0) - Successfully installed scikit-learn-1.7.0
[INFO][Python] 17.06.2025 13:27:43 [Python] (C:\Users\chi.zhang\AppData\Local\slicer.org\Slicer 5.9.0-2025-06-14\slicer.org\Extensions-33686\NNUNet\lib\Slicer-5.9\qt-scripted-modules\SlicerNNUNetLib\InstallLogic.py:56) - - Installing joblib>=1.2.0 --no-deps...
[INFO][Stream] 17.06.2025 13:27:43 [] (unknown:0) - Collecting joblib>=1.2.0
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[INFO][Stream] 17.06.2025 13:27:44 [] (unknown:0) - Installing collected packages: joblib
[INFO][Stream] 17.06.2025 13:27:44 [] (unknown:0) - Successfully installed joblib-1.5.1
[INFO][Python] 17.06.2025 13:27:44 [Python] (C:\Users\chi.zhang\AppData\Local\slicer.org\Slicer 5.9.0-2025-06-14\slicer.org\Extensions-33686\NNUNet\lib\Slicer-5.9\qt-scripted-modules\SlicerNNUNetLib\InstallLogic.py:56) - - Installing threadpoolctl>=3.1.0 --no-deps...
[INFO][Stream] 17.06.2025 13:27:45 [] (unknown:0) - Collecting threadpoolctl>=3.1.0
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[INFO][Stream] 17.06.2025 13:27:45 [] (unknown:0) - Installing collected packages: threadpoolctl
[INFO][Stream] 17.06.2025 13:27:45 [] (unknown:0) - Successfully installed threadpoolctl-3.6.0
[INFO][Python] 17.06.2025 13:27:45 [Python] (C:\Users\chi.zhang\AppData\Local\slicer.org\Slicer 5.9.0-2025-06-14\slicer.org\Extensions-33686\NNUNet\lib\Slicer-5.9\qt-scripted-modules\SlicerNNUNetLib\InstallLogic.py:56) - - Installing future --no-deps...
[INFO][Stream] 17.06.2025 13:27:46 [] (unknown:0) - Collecting future
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[INFO][Stream] 17.06.2025 13:27:47 [] (unknown:0) - Successfully installed future-1.0.0
[INFO][Python] 17.06.2025 13:27:47 [Python] (C:\Users\chi.zhang\AppData\Local\slicer.org\Slicer 5.9.0-2025-06-14\slicer.org\Extensions-33686\NNUNet\lib\Slicer-5.9\qt-scripted-modules\SlicerNNUNetLib\InstallLogic.py:56) - - Installing pandas --no-deps...
[INFO][Stream] 17.06.2025 13:27:48 [] (unknown:0) - Collecting pandas
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[INFO][Stream] 17.06.2025 13:27:48 [] (unknown:0) - Installing collected packages: pandas
[INFO][Stream] 17.06.2025 13:27:55 [] (unknown:0) - Successfully installed pandas-2.3.0
[INFO][Python] 17.06.2025 13:27:56 [Python] (C:\Users\chi.zhang\AppData\Local\slicer.org\Slicer 5.9.0-2025-06-14\slicer.org\Extensions-33686\NNUNet\lib\Slicer-5.9\qt-scripted-modules\SlicerNNUNetLib\InstallLogic.py:56) - - Installing pytz>=2020.1 --no-deps...
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[INFO][Stream] 17.06.2025 13:27:57 [] (unknown:0) - Successfully installed pytz-2025.2
[INFO][Python] 17.06.2025 13:27:57 [Python] (C:\Users\chi.zhang\AppData\Local\slicer.org\Slicer 5.9.0-2025-06-14\slicer.org\Extensions-33686\NNUNet\lib\Slicer-5.9\qt-scripted-modules\SlicerNNUNetLib\InstallLogic.py:56) - - Installing tzdata>=2022.7 --no-deps...
[INFO][Stream] 17.06.2025 13:27:58 [] (unknown:0) - Collecting tzdata>=2022.7
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[INFO][Stream] 17.06.2025 13:27:58 [] (unknown:0) - Installing collected packages: tzdata
[INFO][Stream] 17.06.2025 13:27:58 [] (unknown:0) - Successfully installed tzdata-2025.2
[INFO][Python] 17.06.2025 13:27:58 [Python] (C:\Users\chi.zhang\AppData\Local\slicer.org\Slicer 5.9.0-2025-06-14\slicer.org\Extensions-33686\NNUNet\lib\Slicer-5.9\qt-scripted-modules\SlicerNNUNetLib\InstallLogic.py:56) - - Installing unittest2 --no-deps...
[INFO][Stream] 17.06.2025 13:27:59 [] (unknown:0) - Collecting unittest2
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[INFO][Stream] 17.06.2025 13:27:59 [] (unknown:0) - Installing collected packages: unittest2
[INFO][Stream] 17.06.2025 13:27:59 [] (unknown:0) - Successfully installed unittest2-1.1.0
[INFO][Python] 17.06.2025 13:28:00 [Python] (C:\Users\chi.zhang\AppData\Local\slicer.org\Slicer 5.9.0-2025-06-14\slicer.org\Extensions-33686\NNUNet\lib\Slicer-5.9\qt-scripted-modules\SlicerNNUNetLib\InstallLogic.py:56) - - Installing argparse --no-deps...
[INFO][Stream] 17.06.2025 13:28:00 [] (unknown:0) - Collecting argparse
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[INFO][Stream] 17.06.2025 13:28:00 [] (unknown:0) - Using cached argparse-1.4.0-py2.py3-none-any.whl (23 kB)
[INFO][Stream] 17.06.2025 13:28:00 [] (unknown:0) - Installing collected packages: argparse
[INFO][Stream] 17.06.2025 13:28:00 [] (unknown:0) - Successfully installed argparse-1.4.0
[INFO][Python] 17.06.2025 13:28:01 [Python] (C:\Users\chi.zhang\AppData\Local\slicer.org\Slicer 5.9.0-2025-06-14\slicer.org\Extensions-33686\NNUNet\lib\Slicer-5.9\qt-scripted-modules\SlicerNNUNetLib\InstallLogic.py:56) - - Installing traceback2 --no-deps...
[INFO][Stream] 17.06.2025 13:28:01 [] (unknown:0) - Collecting traceback2
[INFO][Stream] 17.06.2025 13:28:01 [] (unknown:0) -   Using cached traceback2-1.4.0-py2.py3-none-any.whl.metadata (1.5 kB)
[INFO][Stream] 17.06.2025 13:28:01 [] (unknown:0) - Using cached traceback2-1.4.0-py2.py3-none-any.whl (16 kB)
[INFO][Stream] 17.06.2025 13:28:01 [] (unknown:0) - Installing collected packages: traceback2
[INFO][Stream] 17.06.2025 13:28:01 [] (unknown:0) - Successfully installed traceback2-1.4.0
[INFO][Python] 17.06.2025 13:28:02 [Python] (C:\Users\chi.zhang\AppData\Local\slicer.org\Slicer 5.9.0-2025-06-14\slicer.org\Extensions-33686\NNUNet\lib\Slicer-5.9\qt-scripted-modules\SlicerNNUNetLib\InstallLogic.py:56) - - Installing linecache2 --no-deps...
[INFO][Stream] 17.06.2025 13:28:02 [] (unknown:0) - Collecting linecache2
[INFO][Stream] 17.06.2025 13:28:02 [] (unknown:0) -   Using cached linecache2-1.0.0-py2.py3-none-any.whl.metadata (1000 bytes)
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[INFO][Stream] 17.06.2025 13:28:02 [] (unknown:0) - Installing collected packages: linecache2
[INFO][Stream] 17.06.2025 13:28:02 [] (unknown:0) - Successfully installed linecache2-1.0.0
[INFO][Python] 17.06.2025 13:28:03 [Python] (C:\Users\chi.zhang\AppData\Local\slicer.org\Slicer 5.9.0-2025-06-14\slicer.org\Extensions-33686\NNUNet\lib\Slicer-5.9\qt-scripted-modules\SlicerNNUNetLib\InstallLogic.py:56) - - Installing graphviz --no-deps...
[INFO][Stream] 17.06.2025 13:28:03 [] (unknown:0) - Collecting graphviz
[INFO][Stream] 17.06.2025 13:28:03 [] (unknown:0) -   Using cached graphviz-0.21-py3-none-any.whl.metadata (12 kB)
[INFO][Stream] 17.06.2025 13:28:03 [] (unknown:0) - Using cached graphviz-0.21-py3-none-any.whl (47 kB)
[INFO][Stream] 17.06.2025 13:28:03 [] (unknown:0) - Installing collected packages: graphviz
[INFO][Stream] 17.06.2025 13:28:04 [] (unknown:0) - Successfully installed graphviz-0.21
[INFO][Python] 17.06.2025 13:28:04 [Python] (C:\Users\chi.zhang\AppData\Local\slicer.org\Slicer 5.9.0-2025-06-14\slicer.org\Extensions-33686\NNUNet\lib\Slicer-5.9\qt-scripted-modules\SlicerNNUNetLib\InstallLogic.py:56) - - Installing nibabel --no-deps...
[INFO][Stream] 17.06.2025 13:28:04 [] (unknown:0) - Collecting nibabel
[INFO][Stream] 17.06.2025 13:28:04 [] (unknown:0) -   Using cached nibabel-5.3.2-py3-none-any.whl.metadata (9.1 kB)
[INFO][Stream] 17.06.2025 13:28:05 [] (unknown:0) - Using cached nibabel-5.3.2-py3-none-any.whl (3.3 MB)
[INFO][Stream] 17.06.2025 13:28:05 [] (unknown:0) - Installing collected packages: nibabel
[INFO][Stream] 17.06.2025 13:28:06 [] (unknown:0) - Successfully installed nibabel-5.3.2
[INFO][Python] 17.06.2025 13:28:06 [Python] (C:\Users\chi.zhang\AppData\Local\slicer.org\Slicer 5.9.0-2025-06-14\slicer.org\Extensions-33686\NNUNet\lib\Slicer-5.9\qt-scripted-modules\SlicerNNUNetLib\InstallLogic.py:56) - - Installing matplotlib --no-deps...
[INFO][Stream] 17.06.2025 13:28:07 [] (unknown:0) - Collecting matplotlib
[INFO][Stream] 17.06.2025 13:28:07 [] (unknown:0) -   Using cached matplotlib-3.10.3-cp312-cp312-win_amd64.whl.metadata (11 kB)
[INFO][Stream] 17.06.2025 13:28:07 [] (unknown:0) - Using cached matplotlib-3.10.3-cp312-cp312-win_amd64.whl (8.1 MB)
[INFO][Stream] 17.06.2025 13:28:07 [] (unknown:0) - Installing collected packages: matplotlib
[INFO][Stream] 17.06.2025 13:28:09 [] (unknown:0) - Successfully installed matplotlib-3.10.3
[INFO][Python] 17.06.2025 13:28:09 [Python] (C:\Users\chi.zhang\AppData\Local\slicer.org\Slicer 5.9.0-2025-06-14\slicer.org\Extensions-33686\NNUNet\lib\Slicer-5.9\qt-scripted-modules\SlicerNNUNetLib\InstallLogic.py:56) - - Installing contourpy>=1.0.1 --no-deps...
[INFO][Stream] 17.06.2025 13:28:10 [] (unknown:0) - Collecting contourpy>=1.0.1
[INFO][Stream] 17.06.2025 13:28:10 [] (unknown:0) -   Using cached contourpy-1.3.2-cp312-cp312-win_amd64.whl.metadata (5.5 kB)
[INFO][Stream] 17.06.2025 13:28:10 [] (unknown:0) - Using cached contourpy-1.3.2-cp312-cp312-win_amd64.whl (223 kB)
[INFO][Stream] 17.06.2025 13:28:10 [] (unknown:0) - Installing collected packages: contourpy
[INFO][Stream] 17.06.2025 13:28:10 [] (unknown:0) - Successfully installed contourpy-1.3.2
[INFO][Python] 17.06.2025 13:28:10 [Python] (C:\Users\chi.zhang\AppData\Local\slicer.org\Slicer 5.9.0-2025-06-14\slicer.org\Extensions-33686\NNUNet\lib\Slicer-5.9\qt-scripted-modules\SlicerNNUNetLib\InstallLogic.py:56) - - Installing cycler>=0.10 --no-deps...
[INFO][Stream] 17.06.2025 13:28:11 [] (unknown:0) - Collecting cycler>=0.10
[INFO][Stream] 17.06.2025 13:28:11 [] (unknown:0) -   Using cached cycler-0.12.1-py3-none-any.whl.metadata (3.8 kB)
[INFO][Stream] 17.06.2025 13:28:11 [] (unknown:0) - Using cached cycler-0.12.1-py3-none-any.whl (8.3 kB)
[INFO][Stream] 17.06.2025 13:28:11 [] (unknown:0) - Installing collected packages: cycler
[INFO][Stream] 17.06.2025 13:28:11 [] (unknown:0) - Successfully installed cycler-0.12.1
[INFO][Python] 17.06.2025 13:28:11 [Python] (C:\Users\chi.zhang\AppData\Local\slicer.org\Slicer 5.9.0-2025-06-14\slicer.org\Extensions-33686\NNUNet\lib\Slicer-5.9\qt-scripted-modules\SlicerNNUNetLib\InstallLogic.py:56) - - Installing fonttools>=4.22.0 --no-deps...
[INFO][Stream] 17.06.2025 13:28:12 [] (unknown:0) - Collecting fonttools>=4.22.0
[INFO][Stream] 17.06.2025 13:28:12 [] (unknown:0) -   Using cached fonttools-4.58.4-cp312-cp312-win_amd64.whl.metadata (108 kB)
[INFO][Stream] 17.06.2025 13:28:12 [] (unknown:0) - Using cached fonttools-4.58.4-cp312-cp312-win_amd64.whl (2.2 MB)
[INFO][Stream] 17.06.2025 13:28:12 [] (unknown:0) - Installing collected packages: fonttools
[INFO][Stream] 17.06.2025 13:28:14 [] (unknown:0) - Successfully installed fonttools-4.58.4
[INFO][Python] 17.06.2025 13:28:14 [Python] (C:\Users\chi.zhang\AppData\Local\slicer.org\Slicer 5.9.0-2025-06-14\slicer.org\Extensions-33686\NNUNet\lib\Slicer-5.9\qt-scripted-modules\SlicerNNUNetLib\InstallLogic.py:56) - - Installing kiwisolver>=1.3.1 --no-deps...
[INFO][Stream] 17.06.2025 13:28:15 [] (unknown:0) - Collecting kiwisolver>=1.3.1
[INFO][Stream] 17.06.2025 13:28:15 [] (unknown:0) -   Using cached kiwisolver-1.4.8-cp312-cp312-win_amd64.whl.metadata (6.3 kB)
[INFO][Stream] 17.06.2025 13:28:15 [] (unknown:0) - Using cached kiwisolver-1.4.8-cp312-cp312-win_amd64.whl (71 kB)
[INFO][Stream] 17.06.2025 13:28:15 [] (unknown:0) - Installing collected packages: kiwisolver
[INFO][Stream] 17.06.2025 13:28:15 [] (unknown:0) - Successfully installed kiwisolver-1.4.8
[INFO][Python] 17.06.2025 13:28:15 [Python] (C:\Users\chi.zhang\AppData\Local\slicer.org\Slicer 5.9.0-2025-06-14\slicer.org\Extensions-33686\NNUNet\lib\Slicer-5.9\qt-scripted-modules\SlicerNNUNetLib\InstallLogic.py:56) - - Installing seaborn --no-deps...
[INFO][Stream] 17.06.2025 13:28:16 [] (unknown:0) - Collecting seaborn
[INFO][Stream] 17.06.2025 13:28:16 [] (unknown:0) -   Using cached seaborn-0.13.2-py3-none-any.whl.metadata (5.4 kB)
[INFO][Stream] 17.06.2025 13:28:16 [] (unknown:0) - Using cached seaborn-0.13.2-py3-none-any.whl (294 kB)
[INFO][Stream] 17.06.2025 13:28:16 [] (unknown:0) - Installing collected packages: seaborn
[INFO][Stream] 17.06.2025 13:28:16 [] (unknown:0) - Successfully installed seaborn-0.13.2
[INFO][Python] 17.06.2025 13:28:16 [Python] (C:\Users\chi.zhang\AppData\Local\slicer.org\Slicer 5.9.0-2025-06-14\slicer.org\Extensions-33686\NNUNet\lib\Slicer-5.9\qt-scripted-modules\SlicerNNUNetLib\InstallLogic.py:56) - - Installing imagecodecs --no-deps...
[INFO][Stream] 17.06.2025 13:28:17 [] (unknown:0) - Collecting imagecodecs
[INFO][Stream] 17.06.2025 13:28:17 [] (unknown:0) -   Using cached imagecodecs-2025.3.30-cp312-cp312-win_amd64.whl.metadata (20 kB)
[INFO][Stream] 17.06.2025 13:28:17 [] (unknown:0) - Using cached imagecodecs-2025.3.30-cp312-cp312-win_amd64.whl (28.9 MB)
[INFO][Stream] 17.06.2025 13:28:17 [] (unknown:0) - Installing collected packages: imagecodecs
[INFO][Stream] 17.06.2025 13:28:18 [] (unknown:0) - Successfully installed imagecodecs-2025.3.30
[INFO][Python] 17.06.2025 13:28:18 [Python] (C:\Users\chi.zhang\AppData\Local\slicer.org\Slicer 5.9.0-2025-06-14\slicer.org\Extensions-33686\NNUNet\lib\Slicer-5.9\qt-scripted-modules\SlicerNNUNetLib\InstallLogic.py:56) - - Installing yacs --no-deps...
[INFO][Stream] 17.06.2025 13:28:18 [] (unknown:0) - Collecting yacs
[INFO][Stream] 17.06.2025 13:28:19 [] (unknown:0) -   Using cached yacs-0.1.8-py3-none-any.whl.metadata (639 bytes)
[INFO][Stream] 17.06.2025 13:28:19 [] (unknown:0) - Using cached yacs-0.1.8-py3-none-any.whl (14 kB)
[INFO][Stream] 17.06.2025 13:28:19 [] (unknown:0) - Installing collected packages: yacs
[INFO][Stream] 17.06.2025 13:28:19 [] (unknown:0) - Successfully installed yacs-0.1.8
[INFO][Python] 17.06.2025 13:28:19 [Python] (C:\Users\chi.zhang\AppData\Local\slicer.org\Slicer 5.9.0-2025-06-14\slicer.org\Extensions-33686\NNUNet\lib\Slicer-5.9\qt-scripted-modules\SlicerNNUNetLib\InstallLogic.py:56) - - Installing batchgeneratorsv2>=0.3.0 --no-deps...
[INFO][Stream] 17.06.2025 13:28:19 [] (unknown:0) - Collecting batchgeneratorsv2>=0.3.0
[INFO][Stream] 17.06.2025 13:28:19 [] (unknown:0) -   Using cached batchgeneratorsv2-0.3.0-py3-none-any.whl
[INFO][Stream] 17.06.2025 13:28:19 [] (unknown:0) - Installing collected packages: batchgeneratorsv2
[INFO][Stream] 17.06.2025 13:28:20 [] (unknown:0) - Successfully installed batchgeneratorsv2-0.3.0
[INFO][Python] 17.06.2025 13:28:20 [Python] (C:\Users\chi.zhang\AppData\Local\slicer.org\Slicer 5.9.0-2025-06-14\slicer.org\Extensions-33686\NNUNet\lib\Slicer-5.9\qt-scripted-modules\SlicerNNUNetLib\InstallLogic.py:56) - - Installing fft-conv-pytorch --no-deps...
[INFO][Stream] 17.06.2025 13:28:21 [] (unknown:0) - Collecting fft-conv-pytorch
[INFO][Stream] 17.06.2025 13:28:21 [] (unknown:0) -   Using cached fft_conv_pytorch-1.2.0-py3-none-any.whl.metadata (2.8 kB)
[INFO][Stream] 17.06.2025 13:28:21 [] (unknown:0) - Using cached fft_conv_pytorch-1.2.0-py3-none-any.whl (6.8 kB)
[INFO][Stream] 17.06.2025 13:28:21 [] (unknown:0) - Installing collected packages: fft-conv-pytorch
[INFO][Stream] 17.06.2025 13:28:21 [] (unknown:0) - Successfully installed fft-conv-pytorch-1.2.0
[INFO][Python] 17.06.2025 13:28:21 [Python] (C:\Users\chi.zhang\AppData\Local\slicer.org\Slicer 5.9.0-2025-06-14\slicer.org\Extensions-33686\NNUNet\lib\Slicer-5.9\qt-scripted-modules\SlicerNNUNetLib\InstallLogic.py:56) - - Installing blosc2>=3.0.0b1 --no-deps...
[INFO][Stream] 17.06.2025 13:28:21 [] (unknown:0) - Collecting blosc2>=3.0.0b1
[INFO][Stream] 17.06.2025 13:28:21 [] (unknown:0) -   Using cached blosc2-3.4.0-cp312-cp312-win_amd64.whl.metadata (6.9 kB)
[INFO][Stream] 17.06.2025 13:28:22 [] (unknown:0) - Using cached blosc2-3.4.0-cp312-cp312-win_amd64.whl (2.2 MB)
[INFO][Stream] 17.06.2025 13:28:22 [] (unknown:0) - Installing collected packages: blosc2
[INFO][Stream] 17.06.2025 13:28:22 [] (unknown:0) - Successfully installed blosc2-3.4.0
[INFO][Python] 17.06.2025 13:28:22 [Python] (C:\Users\chi.zhang\AppData\Local\slicer.org\Slicer 5.9.0-2025-06-14\slicer.org\Extensions-33686\NNUNet\lib\Slicer-5.9\qt-scripted-modules\SlicerNNUNetLib\InstallLogic.py:56) - - Installing ndindex --no-deps...
[INFO][Stream] 17.06.2025 13:28:23 [] (unknown:0) - Collecting ndindex
[INFO][Stream] 17.06.2025 13:28:23 [] (unknown:0) -   Using cached ndindex-1.10.0-cp312-cp312-win_amd64.whl.metadata (3.7 kB)
[INFO][Stream] 17.06.2025 13:28:23 [] (unknown:0) - Using cached ndindex-1.10.0-cp312-cp312-win_amd64.whl (157 kB)
[INFO][Stream] 17.06.2025 13:28:23 [] (unknown:0) - Installing collected packages: ndindex
[INFO][Stream] 17.06.2025 13:28:23 [] (unknown:0) - Successfully installed ndindex-1.10.0
[INFO][Python] 17.06.2025 13:28:23 [Python] (C:\Users\chi.zhang\AppData\Local\slicer.org\Slicer 5.9.0-2025-06-14\slicer.org\Extensions-33686\NNUNet\lib\Slicer-5.9\qt-scripted-modules\SlicerNNUNetLib\InstallLogic.py:56) - - Installing msgpack --no-deps...
[INFO][Stream] 17.06.2025 13:28:24 [] (unknown:0) - Collecting msgpack
[INFO][Stream] 17.06.2025 13:28:24 [] (unknown:0) -   Using cached msgpack-1.1.1-cp312-cp312-win_amd64.whl.metadata (8.6 kB)
[INFO][Stream] 17.06.2025 13:28:24 [] (unknown:0) - Using cached msgpack-1.1.1-cp312-cp312-win_amd64.whl (72 kB)
[INFO][Stream] 17.06.2025 13:28:24 [] (unknown:0) - Installing collected packages: msgpack
[INFO][Stream] 17.06.2025 13:28:24 [] (unknown:0) - Successfully installed msgpack-1.1.1
[INFO][Python] 17.06.2025 13:28:24 [Python] (C:\Users\chi.zhang\AppData\Local\slicer.org\Slicer 5.9.0-2025-06-14\slicer.org\Extensions-33686\NNUNet\lib\Slicer-5.9\qt-scripted-modules\SlicerNNUNetLib\InstallLogic.py:56) - - Installing platformdirs --no-deps...
[INFO][Stream] 17.06.2025 13:28:25 [] (unknown:0) - Collecting platformdirs
[INFO][Stream] 17.06.2025 13:28:25 [] (unknown:0) -   Using cached platformdirs-4.3.8-py3-none-any.whl.metadata (12 kB)
[INFO][Stream] 17.06.2025 13:28:25 [] (unknown:0) - Using cached platformdirs-4.3.8-py3-none-any.whl (18 kB)
[INFO][Stream] 17.06.2025 13:28:25 [] (unknown:0) - Installing collected packages: platformdirs
[INFO][Stream] 17.06.2025 13:28:25 [] (unknown:0) - Successfully installed platformdirs-4.3.8
[INFO][Python] 17.06.2025 13:28:25 [Python] (C:\Users\chi.zhang\AppData\Local\slicer.org\Slicer 5.9.0-2025-06-14\slicer.org\Extensions-33686\NNUNet\lib\Slicer-5.9\qt-scripted-modules\SlicerNNUNetLib\InstallLogic.py:56) - - Installing numexpr --no-deps...
[INFO][Stream] 17.06.2025 13:28:26 [] (unknown:0) - Collecting numexpr
[INFO][Stream] 17.06.2025 13:28:26 [] (unknown:0) -   Using cached numexpr-2.11.0-cp312-cp312-win_amd64.whl.metadata (9.2 kB)
[INFO][Stream] 17.06.2025 13:28:26 [] (unknown:0) - Using cached numexpr-2.11.0-cp312-cp312-win_amd64.whl (146 kB)
[INFO][Stream] 17.06.2025 13:28:26 [] (unknown:0) - Installing collected packages: numexpr
[INFO][Stream] 17.06.2025 13:28:26 [] (unknown:0) - Successfully installed numexpr-2.11.0
[INFO][Python] 17.06.2025 13:28:26 [Python] (C:\Users\chi.zhang\AppData\Local\slicer.org\Slicer 5.9.0-2025-06-14\slicer.org\Extensions-33686\NNUNet\lib\Slicer-5.9\qt-scripted-modules\SlicerNNUNetLib\InstallLogic.py:56) - - Installing py-cpuinfo --no-deps...
[INFO][Stream] 17.06.2025 13:28:27 [] (unknown:0) - Collecting py-cpuinfo
[INFO][Stream] 17.06.2025 13:28:27 [] (unknown:0) -   Using cached py_cpuinfo-9.0.0-py3-none-any.whl.metadata (794 bytes)
[INFO][Stream] 17.06.2025 13:28:27 [] (unknown:0) - Using cached py_cpuinfo-9.0.0-py3-none-any.whl (22 kB)
[INFO][Stream] 17.06.2025 13:28:27 [] (unknown:0) - Installing collected packages: py-cpuinfo
[INFO][Stream] 17.06.2025 13:28:27 [] (unknown:0) - Successfully installed py-cpuinfo-9.0.0
[INFO][Python] 17.06.2025 13:28:27 [Python] (C:\Users\chi.zhang\AppData\Local\slicer.org\Slicer 5.9.0-2025-06-14\slicer.org\Extensions-33686\NNUNet\lib\Slicer-5.9\qt-scripted-modules\SlicerNNUNetLib\InstallLogic.py:56) - PyTorch Python package is required. Installing... (it may take several minutes)
[INFO][Python] 17.06.2025 13:28:27 [Python] (C:/Users/chi.zhang/AppData/Local/slicer.org/Slicer 5.9.0-2025-06-14/slicer.org/Extensions-33686/PyTorch/lib/Slicer-5.9/qt-scripted-modules/PyTorchUtils.py:216) - Install PyTorch using light-the-torch with arguments: ['install', 'torch>=2.1.2', 'torchvision']
[INFO][Stream] 17.06.2025 13:28:28 [] (unknown:0) - Collecting light-the-torch>=0.5
[INFO][Stream] 17.06.2025 13:28:28 [] (unknown:0) -   Using cached light_the_torch-0.8.0-py3-none-any.whl.metadata (9.3 kB)
[INFO][Stream] 17.06.2025 13:28:28 [] (unknown:0) - Collecting pip<24.4,>=22.3 (from light-the-torch>=0.5)
[INFO][Stream] 17.06.2025 13:28:28 [] (unknown:0) -   Using cached pip-24.3.1-py3-none-any.whl.metadata (3.7 kB)
[INFO][Stream] 17.06.2025 13:28:28 [] (unknown:0) - Using cached light_the_torch-0.8.0-py3-none-any.whl (14 kB)
[INFO][Stream] 17.06.2025 13:28:28 [] (unknown:0) - Using cached pip-24.3.1-py3-none-any.whl (1.8 MB)
[INFO][Stream] 17.06.2025 13:28:28 [] (unknown:0) - Installing collected packages: pip, light-the-torch
[INFO][Stream] 17.06.2025 13:28:28 [] (unknown:0) -   Attempting uninstall: pip
[INFO][Stream] 17.06.2025 13:28:28 [] (unknown:0) -     Found existing installation: pip 25.1.1
[INFO][Stream] 17.06.2025 13:28:28 [] (unknown:0) -     Uninstalling pip-25.1.1:
[INFO][Stream] 17.06.2025 13:28:28 [] (unknown:0) -       Successfully uninstalled pip-25.1.1
[INFO][Stream] 17.06.2025 13:28:30 [] (unknown:0) -
[INFO][Stream] 17.06.2025 13:28:30 [] (unknown:0) - Successfully installed light-the-torch-0.8.0 pip-24.3.1
[DEBUG][Python] 17.06.2025 13:28:30 [Python] (C:\Users\chi.zhang\AppData\Local\slicer.org\Slicer 5.9.0-2025-06-14\lib\Python\Lib\site-packages\pip\_internal\vcs\versioncontrol.py:206) - Registered VCS backend: bzr
[DEBUG][Python] 17.06.2025 13:28:30 [Python] (C:\Users\chi.zhang\AppData\Local\slicer.org\Slicer 5.9.0-2025-06-14\lib\Python\Lib\site-packages\pip\_internal\vcs\versioncontrol.py:206) - Registered VCS backend: git
[DEBUG][Python] 17.06.2025 13:28:30 [Python] (C:\Users\chi.zhang\AppData\Local\slicer.org\Slicer 5.9.0-2025-06-14\lib\Python\Lib\site-packages\pip\_internal\vcs\versioncontrol.py:206) - Registered VCS backend: hg
[DEBUG][Python] 17.06.2025 13:28:30 [Python] (C:\Users\chi.zhang\AppData\Local\slicer.org\Slicer 5.9.0-2025-06-14\lib\Python\Lib\site-packages\pip\_internal\vcs\versioncontrol.py:206) - Registered VCS backend: svn
[INFO][Stream] 17.06.2025 13:28:35 [] (unknown:0) - Collecting torch>=2.1.2
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[INFO][Stream] 17.06.2025 13:28:45 [] (unknown:0) - Collecting mpmath<1.4,>=1.1.0 (from sympy>=1.13.3->torch>=2.1.2)
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[INFO][Stream] 17.06.2025 13:28:56 [] (unknown:0) - Installing collected packages: mpmath, sympy, MarkupSafe, jinja2, torch, torchvision
[INFO][Stream] 17.06.2025 13:29:45 [] (unknown:0) - Successfully installed MarkupSafe-3.0.2 jinja2-3.1.6 mpmath-1.3.0 sympy-1.13.3 torch-2.7.1+cu126 torchvision-0.22.1+cu126
[INFO][Python] 17.06.2025 13:29:47 [Python] (C:/Users/chi.zhang/AppData/Local/slicer.org/Slicer 5.9.0-2025-06-14/slicer.org/Extensions-33686/PyTorch/lib/Slicer-5.9/qt-scripted-modules/PyTorchUtils.py:226) - PyTorch 2.7.1+cu126 installed successfully.
[INFO][Python] 17.06.2025 13:29:47 [Python] (C:\Users\chi.zhang\AppData\Local\slicer.org\Slicer 5.9.0-2025-06-14\slicer.org\Extensions-33686\NNUNet\lib\Slicer-5.9\qt-scripted-modules\SlicerNNUNetLib\InstallLogic.py:56) - Installing a working acvl-utils package version...
[INFO][Stream] 17.06.2025 13:29:48 [] (unknown:0) - Collecting acvl_utils==0.2
[INFO][Stream] 17.06.2025 13:29:48 [] (unknown:0) -   Using cached acvl_utils-0.2-py3-none-any.whl
[INFO][Stream] 17.06.2025 13:29:48 [] (unknown:0) - Requirement already satisfied: numpy in c:\users\chi.zhang\appdata\local\slicer.org\slicer 5.9.0-2025-06-14\lib\python\lib\site-packages (from acvl_utils==0.2) (2.0.2)
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[INFO][Stream] 17.06.2025 13:29:49 [] (unknown:0) - Collecting argparse (from unittest2->batchgenerators->acvl_utils==0.2)
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[INFO][Stream] 17.06.2025 13:29:49 [] (unknown:0) - Installing collected packages: argparse, connected-components-3d, acvl_utils
[INFO][Stream] 17.06.2025 13:29:49 [] (unknown:0) - Successfully installed acvl_utils-0.2 argparse-1.4.0 connected-components-3d-3.24.0
[INFO][Python] 17.06.2025 13:29:49 [Python] (C:\Users\chi.zhang\AppData\Local\slicer.org\Slicer 5.9.0-2025-06-14\slicer.org\Extensions-33686\NNUNet\lib\Slicer-5.9\qt-scripted-modules\SlicerNNUNetLib\InstallLogic.py:56) - nnUNet installation completed successfully.
[DEBUG][Python] 17.06.2025 13:29:49 [Python] (C:\Users\chi.zhang\AppData\Local\slicer.org\Slicer 5.9.0-2025-06-14\lib\Python\Lib\site-packages\urllib3\connectionpool.py:1049) - Starting new HTTPS connection (1): www.google.com:443
[DEBUG][Python] 17.06.2025 13:29:49 [Python] (C:\Users\chi.zhang\AppData\Local\slicer.org\Slicer 5.9.0-2025-06-14\lib\Python\Lib\site-packages\urllib3\connectionpool.py:544) - https://www.google.com:443 "GET / HTTP/1.1" 200 None
[DEBUG][Python] 17.06.2025 13:29:49 [Python] (C:\Users\chi.zhang\AppData\Local\slicer.org\Slicer 5.9.0-2025-06-14\lib\Python\Lib\site-packages\urllib3\connectionpool.py:1049) - Starting new HTTPS connection (1): api.github.com:443
[DEBUG][Python] 17.06.2025 13:29:49 [Python] (C:\Users\chi.zhang\AppData\Local\slicer.org\Slicer 5.9.0-2025-06-14\lib\Python\Lib\site-packages\urllib3\connectionpool.py:544) - https://api.github.com:443 "GET /repos/gaudot/SlicerDentalSegmentator HTTP/1.1" 200 1477
[DEBUG][Python] 17.06.2025 13:29:49 [Python] (C:\Users\chi.zhang\AppData\Local\slicer.org\Slicer 5.9.0-2025-06-14\lib\Python\Lib\site-packages\urllib3\connectionpool.py:1049) - Starting new HTTPS connection (1): api.github.com:443
[DEBUG][Python] 17.06.2025 13:29:50 [Python] (C:\Users\chi.zhang\AppData\Local\slicer.org\Slicer 5.9.0-2025-06-14\lib\Python\Lib\site-packages\urllib3\connectionpool.py:544) - https://api.github.com:443 "GET /repos/gaudot/SlicerDentalSegmentator/releases HTTP/1.1" 200 817
[DEBUG][Python] 17.06.2025 13:29:50 [Python] (C:\Users\chi.zhang\AppData\Local\slicer.org\Slicer 5.9.0-2025-06-14\lib\Python\Lib\site-packages\urllib3\connectionpool.py:1049) - Starting new HTTPS connection (1): api.github.com:443
[DEBUG][Python] 17.06.2025 13:29:50 [Python] (C:\Users\chi.zhang\AppData\Local\slicer.org\Slicer 5.9.0-2025-06-14\lib\Python\Lib\site-packages\urllib3\connectionpool.py:544) - https://api.github.com:443 "GET /repos/gaudot/SlicerDentalSegmentator/releases/147040025/assets HTTP/1.1" 200 603
[DEBUG][Python] 17.06.2025 13:29:50 [Python] (C:\Users\chi.zhang\AppData\Local\slicer.org\Slicer 5.9.0-2025-06-14\lib\Python\Lib\site-packages\urllib3\connectionpool.py:1049) - Starting new HTTPS connection (1): github.com:443
[DEBUG][Python] 17.06.2025 13:29:50 [Python] (C:\Users\chi.zhang\AppData\Local\slicer.org\Slicer 5.9.0-2025-06-14\lib\Python\Lib\site-packages\urllib3\connectionpool.py:544) - https://github.com:443 "GET /gaudot/SlicerDentalSegmentator/releases/download/v1.0.0-alpha/Dataset111_453CT_v100.zip HTTP/1.1" 302 0
[DEBUG][Python] 17.06.2025 13:29:50 [Python] (C:\Users\chi.zhang\AppData\Local\slicer.org\Slicer 5.9.0-2025-06-14\lib\Python\Lib\site-packages\urllib3\connectionpool.py:1049) - Starting new HTTPS connection (1): objects.githubusercontent.com:443
[DEBUG][Python] 17.06.2025 13:29:51 [Python] (C:\Users\chi.zhang\AppData\Local\slicer.org\Slicer 5.9.0-2025-06-14\lib\Python\Lib\site-packages\urllib3\connectionpool.py:544) - https://objects.githubusercontent.com:443 "GET /github-production-release-asset-2e65be/770505096/cc62156e-5361-4c66-aebe-57bd05af8d21?X-Amz-Algorithm=AWS4-HMAC-SHA256&X-Amz-Credential=releaseassetproduction%2F20250617%2Fus-east-1%2Fs3%2Faws4_request&X-Amz-Date=20250617T182950Z&X-Amz-Expires=300&X-Amz-Signature=660b1f22a4547fa25103cc647437f370b6230635a551525f9d177ec580bb4b1a&X-Amz-SignedHeaders=host&response-content-disposition=attachment%3B%20filename%3DDataset111_453CT_v100.zip&response-content-type=application%2Foctet-stream HTTP/1.1" 200 229698747
[ERROR][Python] 17.06.2025 13:30:04 [Python] (C:\Users\chi.zhang\AppData\Local\slicer.org\Slicer 5.9.0-2025-06-14\bin\Python\slicer\util.py:3146) - Failed to load the segmentation.
Something went wrong during the nnUNet processing.
Please check the logs for potential errors and contact the library maintainers.

I then tried TotalSegmentator:

[Python] Failed to compute results.
[Python] Command '['C:/Users/chi.zhang/AppData/Local/slicer.org/Slicer 5.9.0-2025-06-14/bin/../bin\\PythonSlicer.EXE', 'C:\\Users\\chi.zhang\\AppData\\Local\\slicer.org\\Slicer 5.9.0-2025-06-14\\lib\\Python\\Scripts\\TotalSegmentator.exe', '-i', 'C:/Users/chi.zhang/AppData/Local/Temp/Slicer/__SlicerTemp__2025-06-17_13+35+24.247/total-segmentator-input.nii', '-o', 'C:/Users/chi.zhang/AppData/Local/Temp/Slicer/__SlicerTemp__2025-06-17_13+35+24.247/segmentation', '--ml', '--task', 'total']' returned non-zero exit status 1.
Traceback (most recent call last):
  File "C:/Users/chi.zhang/AppData/Local/slicer.org/Slicer 5.9.0-2025-06-14/slicer.org/Extensions-33686/TotalSegmentator/lib/Slicer-5.9/qt-scripted-modules/TotalSegmentator.py", line 307, in onApplyButton
    self.logic.process(self.ui.inputVolumeSelector.currentNode(), self.ui.outputSegmentationSelector.currentNode(),
  File "C:/Users/chi.zhang/AppData/Local/slicer.org/Slicer 5.9.0-2025-06-14/slicer.org/Extensions-33686/TotalSegmentator/lib/Slicer-5.9/qt-scripted-modules/TotalSegmentator.py", line 1046, in process
    self.processVolume(inputFile, inputVolume,
  File "C:/Users/chi.zhang/AppData/Local/slicer.org/Slicer 5.9.0-2025-06-14/slicer.org/Extensions-33686/TotalSegmentator/lib/Slicer-5.9/qt-scripted-modules/TotalSegmentator.py", line 1113, in processVolume
    self.logProcessOutput(proc)
  File "C:/Users/chi.zhang/AppData/Local/slicer.org/Slicer 5.9.0-2025-06-14/slicer.org/Extensions-33686/TotalSegmentator/lib/Slicer-5.9/qt-scripted-modules/TotalSegmentator.py", line 892, in logProcessOutput
    raise CalledProcessError(retcode, proc.args, output=proc.stdout, stderr=proc.stderr)
subprocess.CalledProcessError: Command '['C:/Users/chi.zhang/AppData/Local/slicer.org/Slicer 5.9.0-2025-06-14/bin/../bin\\PythonSlicer.EXE', 'C:\\Users\\chi.zhang\\AppData\\Local\\slicer.org\\Slicer 5.9.0-2025-06-14\\lib\\Python\\Scripts\\TotalSegmentator.exe', '-i', 'C:/Users/chi.zhang/AppData/Local/Temp/Slicer/__SlicerTemp__2025-06-17_13+35+24.247/total-segmentator-input.nii', '-o', 'C:/Users/chi.zhang/AppData/Local/Temp/Slicer/__SlicerTemp__2025-06-17_13+35+24.247/segmentation', '--ml', '--task', 'total']' returned non-zero exit status 1.

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nnUNET failed to load segmentation in DentalSegmentator & totalSegmentator

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