Plot images from PNG files in slicer jupyter kernel

[lassoan (Andras Lasso)]

@BennetMontgomery

The way I have it set up now is the notebook takes shots of the 3D view and writes them to png files, and I would like to load the png files into the notebook and plot them in a table.

This is already implemented with a one-liner for slice views:

By changing a few lines in ViewLightboxDisplay script (essentially, replace screenCaptureLogic.captureSliceSweep by screenCaptureLogic.capture3dViewRotation, you can create a table showing 3D view in different orientations. I’ve created this using Screen Capture module GUI, you can play a bit with the GUI, too to get to know a bit better what the module can do:

Finally, here is an example of a script creating some data augmentation for training data and generation of an overview image of all data sets:

Generating augmented training data from nrrd file using random translations, rotations, and deformations

I’ve updated the volume augmentation script to apply random translations and rotations in addition to the random deformations, and to also take screenshots so that you can get a quick overview of how the augmented data looks like. Gallery of example output: [image] Script that generated it: