Problem report for Slicer 5.6.2 win-amd64: [please describe expected and actual behavior]
I have installed SlicerRT.
I have downloaded a sample DICOM RT folder from:
eclipse-8.1.20-phantom-ent
I add data to the scene and select the folder and try to load the data, but it doesn’t seem to be able to load the DICOM RT plan data. Maybe SlicerRT isn’t installed correctly?
Blockquote
[DEBUG][Qt] 09.01.2025 09:26:52 (unknown:0) - Session start time …: 20250109_092652
[DEBUG][Qt] 09.01.2025 09:26:52 (unknown:0) - Slicer version …: 5.6.2 (revision 32448 / f10cd8c) win-amd64 - installed release
[DEBUG][Qt] 09.01.2025 09:26:52 (unknown:0) - Operating system …: Windows / Personal / (Build 19045, Code Page 65001) - 64-bit
[DEBUG][Qt] 09.01.2025 09:26:52 (unknown:0) - Memory …: 32715 MB physical, 37579 MB virtual
[DEBUG][Qt] 09.01.2025 09:26:52 (unknown:0) - CPU …: GenuineIntel , 8 cores, 8 logical processors
[DEBUG][Qt] 09.01.2025 09:26:52 (unknown:0) - VTK configuration …: OpenGL2 rendering, TBB threading
[DEBUG][Qt] 09.01.2025 09:26:52 (unknown:0) - Qt configuration …: version 5.15.2, with SSL, requested OpenGL 3.2 (compatibility profile)
[DEBUG][Qt] 09.01.2025 09:26:52 (unknown:0) - Internationalization …: disabled, language=
[DEBUG][Qt] 09.01.2025 09:26:52 (unknown:0) - Developer mode …: enabled
[DEBUG][Qt] 09.01.2025 09:26:52 (unknown:0) - Application path …: D:/Users/Tracy/AppData/Local/slicer.org/Slicer 5.6.2/bin
[DEBUG][Qt] 09.01.2025 09:26:52 (unknown:0) - Additional module paths …: D:/Work/Ishikawa/SlicerPIT/Plan2PIT, slicer.org/Extensions-32448/SlicerElastix/lib/Slicer-5.6/qt-scripted-modules
[INFO][Stream] 09.01.2025 09:26:53 (unknown:0) - module ‘unittest’ is imported
[INFO][Stream] 09.01.2025 09:26:53 (unknown:0) - module ‘logging’ is imported
[INFO][Stream] 09.01.2025 09:26:53 (unknown:0) - module ‘vtk’ is imported
[INFO][Stream] 09.01.2025 09:26:53 (unknown:0) - module ‘qt’ is imported
[INFO][Stream] 09.01.2025 09:26:53 (unknown:0) - module ‘ctk’ is imported
[INFO][Stream] 09.01.2025 09:26:53 (unknown:0) - module ‘slicer’ is imported
[INFO][Stream] 09.01.2025 09:26:53 (unknown:0) - module ‘DICOMScalarVolumePlugin’ is imported
[INFO][Stream] 09.01.2025 09:26:53 (unknown:0) - module ‘numpy’ is imported as ‘np’
[INFO][Stream] 09.01.2025 09:26:53 (unknown:0) - module ‘copy’ is imported
[INFO][Stream] 09.01.2025 09:26:54 (unknown:0) - module ‘pandas’ is imported as ‘pd’
[INFO][Stream] 09.01.2025 09:26:54 (unknown:0) - module ‘math’ is imported
[INFO][Stream] 09.01.2025 09:26:54 (unknown:0) - module ‘csv’ is imported
[INFO][Stream] 09.01.2025 09:26:54 (unknown:0) - module ‘Rotation’ from ‘scipy.spatial.transform’ is imported as ‘R’
[DEBUG][Python] 09.01.2025 09:26:54 [Python] (D:\Users\Tracy\AppData\Local\slicer.org\Slicer 5.6.2\lib\Slicer-5.6\qt-scripted-modules\SubjectHierarchyPlugins\AbstractScriptedSubjectHierarchyPlugin.py:39) - Scripted subject hierarchy plugin registered: SegmentEditor
[DEBUG][Python] 09.01.2025 09:26:54 [Python] (D:\Users\Tracy\AppData\Local\slicer.org\Slicer 5.6.2\lib\Slicer-5.6\qt-scripted-modules\SubjectHierarchyPlugins\AbstractScriptedSubjectHierarchyPlugin.py:39) - Scripted subject hierarchy plugin registered: SegmentStatistics
[DEBUG][Qt] 09.01.2025 09:26:55 (unknown:0) - Switch to module: “Welcome”
[DEBUG][Qt] 09.01.2025 09:27:53 (unknown:0) - Switch to module: “DICOM”
[WARNING][Python] 09.01.2025 09:28:03 [Python] (D:/Users/Tracy/AppData/Local/slicer.org/Slicer 5.6.2/bin/…/lib/Slicer-5.6/qt-scripted-modules/DICOMScalarVolumePlugin.py:332) - Please install SlicerRT extension to enable loading of DICOM RT Structure Set objects
[WARNING][Python] 09.01.2025 09:28:05 [Python] (D:\Users\Tracy\AppData\Local\slicer.org\Slicer 5.6.2\lib\Slicer-5.6\qt-scripted-modules\DICOMLib\DICOMBrowser.py:571) - Warning in DICOM plugin Scalar Volume when examining loadable 4: Unnamed Series: Reference image in series does not contain geometry information. Please use caution.
[WARNING][Python] 09.01.2025 09:28:05 [Python] (D:\Users\Tracy\AppData\Local\slicer.org\Slicer 5.6.2\lib\Slicer-5.6\qt-scripted-modules\DICOMLib\DICOMBrowser.py:571) - Warning in DICOM plugin Scalar Volume when examining loadable 5: Unnamed Series: Multi-frame image. If slice orientation or spacing is non-uniform then the image may be displayed incorrectly. Use with caution.
[WARNING][Python] 09.01.2025 09:28:05 [Python] (D:\Users\Tracy\AppData\Local\slicer.org\Slicer 5.6.2\lib\Slicer-5.6\qt-scripted-modules\DICOMLib\DICOMBrowser.py:571) - Warning in DICOM plugin Scalar Volume when examining loadable 8: Unnamed Series: Reference image in series does not contain geometry information. Please use caution.
[INFO][Python] 09.01.2025 09:28:05 [Python] (D:\Users\Tracy\AppData\Local\slicer.org\Slicer 5.6.2\bin\Python\slicer\util.py:3009) - Warnings detected during load. Examine data in Advanced mode for details. Load anyway?
[INFO][Python] 09.01.2025 09:28:08 [Python] (D:/Users/Tracy/AppData/Local/slicer.org/Slicer 5.6.2/bin/…/lib/Slicer-5.6/qt-scripted-modules/DICOMScalarVolumePlugin.py:446) - Loading with imageIOName: GDCM
[INFO][Python] 09.01.2025 09:28:08 [Python] (D:/Users/Tracy/AppData/Local/slicer.org/Slicer 5.6.2/bin/…/lib/Slicer-5.6/qt-scripted-modules/DICOMScalarVolumePlugin.py:525) - Window/level found in DICOM tags (center=40.0, width=400.0) has been applied to volume 2: ENT IMRT
[DEBUG][Python] 09.01.2025 09:28:08 [Python] (D:/Users/Tracy/AppData/Local/slicer.org/Slicer 5.6.2/bin/…/lib/Slicer-5.6/qt-scripted-modules/DICOMScalarVolumePlugin.py:901) - Irregular volume geometry detected, but maximum error is within tolerance (maximum error of 6.4e-05 mm, tolerance threshold is 0.001 mm).
[INFO][Python] 09.01.2025 09:28:08 [Python] (D:/Users/Tracy/AppData/Local/slicer.org/Slicer 5.6.2/bin/…/lib/Slicer-5.6/qt-scripted-modules/DICOMScalarVolumePlugin.py:446) - Loading with imageIOName: GDCM
[ERROR][VTK] 09.01.2025 09:28:08 [vtkITKArchetypeImageSeriesVectorReaderFile (000002E89F1605D0)] (vtkITKArchetypeImageSeriesReader.cxx:525) - vtkITKArchetypeImageSeriesReader::ExecuteInformation: Cannot open C:/Users/Tracy/Documents/SlicerDICOMDatabase/dicom/35b6dee7/9ab5477d/3e60bf55cf214f271f0016aa96e2a527.dcm. ITK exception info: error in unknown: Could not create IO object for reading file C:/Users/Tracy/Documents/SlicerDICOMDatabase/dicom/35b6dee7/9ab5477d/3e60bf55cf214f271f0016aa96e2a527.dcm
Tried to create one of the following:
BMPImageIO
BioRadImageIO
DCMTKImageIO
GDCMImageIO
GiplImageIO
JPEGImageIO
LSMImageIO
MGHImageIO
MINCImageIO
MRCImageIO
MetaImageIO
NiftiImageIO
NrrdImageIO
PNGImageIO
ScancoImageIO
StimulateImageIO
TIFFImageIO
VTKImageIO
MRMLIDImageIO
You probably failed to set a file suffix, or
set the suffix to an unsupported type.
[ERROR][VTK] 09.01.2025 09:28:08 [vtkCompositeDataPipeline (000002E8EE677720)] (vtkExecutive.cxx:742) - Algorithm vtkITKArchetypeImageSeriesVectorReaderFile (000002E89F1605D0) returned failure for request: vtkInformation (000002E8A41767C0)
Debug: Off
Modified Time: 245317
Reference Count: 1
Registered Events: (none)
Request: REQUEST_INFORMATION
FORWARD_DIRECTION: 0
ALGORITHM_AFTER_FORWARD: 1
[ERROR][Python] 09.01.2025 09:28:08 [Python] (D:/Users/Tracy/AppData/Local/slicer.org/Slicer 5.6.2/bin/…/lib/Slicer-5.6/qt-scripted-modules/DICOMScalarVolumePlugin.py:452) - Could not read scalar volume using GDCM approach. Error is: FileFormatError
[INFO][Python] 09.01.2025 09:28:08 [Python] (D:/Users/Tracy/AppData/Local/slicer.org/Slicer 5.6.2/bin/…/lib/Slicer-5.6/qt-scripted-modules/DICOMScalarVolumePlugin.py:446) - Loading with imageIOName: DCMTK
[ERROR][VTK] 09.01.2025 09:28:08 [vtkITKArchetypeImageSeriesVectorReaderFile (000002E89F15D5D0)] (vtkITKArchetypeImageSeriesReader.cxx:525) - vtkITKArchetypeImageSeriesReader::ExecuteInformation: Cannot open C:/Users/Tracy/Documents/SlicerDICOMDatabase/dicom/35b6dee7/9ab5477d/3e60bf55cf214f271f0016aa96e2a527.dcm. ITK exception info: error in unknown: Could not create IO object for reading file C:/Users/Tracy/Documents/SlicerDICOMDatabase/dicom/35b6dee7/9ab5477d/3e60bf55cf214f271f0016aa96e2a527.dcm
Tried to create one of the following:
BMPImageIO
BioRadImageIO
DCMTKImageIO
GDCMImageIO
GiplImageIO
JPEGImageIO
LSMImageIO
MGHImageIO
MINCImageIO
MRCImageIO
MetaImageIO
NiftiImageIO
NrrdImageIO
PNGImageIO
ScancoImageIO
StimulateImageIO
TIFFImageIO
VTKImageIO
MRMLIDImageIO
You probably failed to set a file suffix, or
set the suffix to an unsupported type.
[ERROR][VTK] 09.01.2025 09:28:08 [vtkCompositeDataPipeline (000002E8EE6762E0)] (vtkExecutive.cxx:742) - Algorithm vtkITKArchetypeImageSeriesVectorReaderFile (000002E89F15D5D0) returned failure for request: vtkInformation (000002E8A41752C0)
Debug: Off
Modified Time: 245412
Reference Count: 1
Registered Events: (none)
Request: REQUEST_INFORMATION
FORWARD_DIRECTION: 0
ALGORITHM_AFTER_FORWARD: 1
[ERROR][Python] 09.01.2025 09:28:08 [Python] (D:/Users/Tracy/AppData/Local/slicer.org/Slicer 5.6.2/bin/…/lib/Slicer-5.6/qt-scripted-modules/DICOMScalarVolumePlugin.py:452) - Could not read scalar volume using DCMTK approach. Error is: FileFormatError
[INFO][Python] 09.01.2025 09:28:08 [Python] (D:/Users/Tracy/AppData/Local/slicer.org/Slicer 5.6.2/bin/…/lib/Slicer-5.6/qt-scripted-modules/DICOMScalarVolumePlugin.py:446) - Loading with imageIOName: GDCM
[WARNING][Python] 09.01.2025 09:28:08 [Python] (D:/Users/Tracy/AppData/Local/slicer.org/Slicer 5.6.2/bin/…/lib/Slicer-5.6/qt-scripted-modules/DICOMScalarVolumePlugin.py:818) - Cannot get DICOM slice positions for volume 5: Unnamed Series
[INFO][Python] 09.01.2025 09:28:08 [Python] (D:/Users/Tracy/AppData/Local/slicer.org/Slicer 5.6.2/bin/…/lib/Slicer-5.6/qt-scripted-modules/DICOMScalarVolumePlugin.py:446) - Loading with imageIOName: GDCM
[INFO][Python] 09.01.2025 09:28:08 [Python] (D:/Users/Tracy/AppData/Local/slicer.org/Slicer 5.6.2/bin/…/lib/Slicer-5.6/qt-scripted-modules/DICOMScalarVolumePlugin.py:525) - Window/level found in DICOM tags (center=15000.0, width=30000.0) has been applied to volume 8: Unnamed Series
[WARNING][Python] 09.01.2025 09:28:08 [Python] (D:/Users/Tracy/AppData/Local/slicer.org/Slicer 5.6.2/bin/…/lib/Slicer-5.6/qt-scripted-modules/DICOMScalarVolumePlugin.py:827) - No geometry information available for DICOM data, skipping corner calculations
[WARNING][Python] 09.01.2025 09:28:08 [Python] (D:\Users\Tracy\AppData\Local\slicer.org\Slicer 5.6.2\bin\Python\slicer\util.py:3009) - Could not load: 4: Unnamed Series as a Scalar Volume
[CRITICAL][FD] 09.01.2025 09:33:36 (unknown:0) -
[CRITICAL][FD] 09.01.2025 09:33:36 (unknown:0) - DevTools listening on ws://127.0.0.1:1337/devtools/browser/c4aeece0-34a6-4923-87a7-9410476e12da
[WARNING][Qt] 09.01.2025 09:33:36 (unknown:0) - Remote debugging server started successfully. Try pointing a Chromium-based browser to http://127.0.0.1:1337
[WARNING][Qt] 09.01.2025 09:33:40 (unknown:0) - “@KitwareMedical/slicer-extensions-webapp” 0 “Mixed Content: The page at ‘@KitwareMedical/slicer-extensions-webapp’ was loaded over HTTPS, but requested an insecure image ‘http://wiki.slicer.org/slicerWiki/images/2/2a/CarreraSliceEffect.png’. This content should also be served over HTTPS.”
[WARNING][Qt] 09.01.2025 09:33:40 (unknown:0) - Mixed Content: The page at ‘@KitwareMedical/slicer-extensions-webapp’ was loaded over HTTPS, but requested an insecure image ‘http://wiki.slicer.org/slicerWiki/images/2/2a/CarreraSliceEffect.png’. This content should also be served over HTTPS.
[WARNING][Qt] 09.01.2025 09:33:40 (unknown:0) - “@KitwareMedical/slicer-extensions-webapp” 0 “Mixed Content: The page at ‘@KitwareMedical/slicer-extensions-webapp’ was loaded over HTTPS, but requested an insecure image ‘http://www.slicer.org/slicerWiki/images/b/b7/CurveMakerIcon.png’. This content should also be served over HTTPS.”
[WARNING][Qt] 09.01.2025 09:33:40 (unknown:0) - Mixed Content: The page at ‘@KitwareMedical/slicer-extensions-webapp’ was loaded over HTTPS, but requested an insecure image ‘http://www.slicer.org/slicerWiki/images/b/b7/CurveMakerIcon.png’. This content should also be served over HTTPS.
[WARNING][Qt] 09.01.2025 09:33:40 (unknown:0) - “@KitwareMedical/slicer-extensions-webapp” 0 “Mixed Content: The page at ‘@KitwareMedical/slicer-extensions-webapp’ was loaded over HTTPS, but requested an insecure image ‘http://www.slicer.org/slicerWiki/images/a/ac/ErodeDilateLabelIcon.png’. This content should also be served over HTTPS.”
[WARNING][Qt] 09.01.2025 09:33:40 (unknown:0) - Mixed Content: The page at ‘@KitwareMedical/slicer-extensions-webapp’ was loaded over HTTPS, but requested an insecure image ‘http://www.slicer.org/slicerWiki/images/a/ac/ErodeDilateLabelIcon.png’. This content should also be served over HTTPS.
[WARNING][Qt] 09.01.2025 09:33:40 (unknown:0) - “@KitwareMedical/slicer-extensions-webapp” 0 “Mixed Content: The page at ‘@KitwareMedical/slicer-extensions-webapp’ was loaded over HTTPS, but requested an insecure image ‘http://www.slicer.org/slicerWiki/images/a/a7/GyroGuide.png’. This content should also be served over HTTPS.”
[WARNING][Qt] 09.01.2025 09:33:40 (unknown:0) - Mixed Content: The page at ‘@KitwareMedical/slicer-extensions-webapp’ was loaded over HTTPS, but requested an insecure image ‘http://www.slicer.org/slicerWiki/images/a/a7/GyroGuide.png’. This content should also be served over HTTPS.
[WARNING][Qt] 09.01.2025 09:33:40 (unknown:0) - “@KitwareMedical/slicer-extensions-webapp” 0 “Mixed Content: The page at ‘@KitwareMedical/slicer-extensions-webapp’ was loaded over HTTPS, but requested an insecure image ‘http://www.slicer.org/slicerWiki/images/e/e5/QuickToolsLogo.png’. This content should also be served over HTTPS.”
[WARNING][Qt] 09.01.2025 09:33:40 (unknown:0) - Mixed Content: The page at ‘@KitwareMedical/slicer-extensions-webapp’ was loaded over HTTPS, but requested an insecure image ‘http://www.slicer.org/slicerWiki/images/e/e5/QuickToolsLogo.png’. This content should also be served over HTTPS.
[WARNING][Qt] 09.01.2025 09:33:40 (unknown:0) - “@KitwareMedical/slicer-extensions-webapp” 0 “Mixed Content: The page at ‘@KitwareMedical/slicer-extensions-webapp’ was loaded over HTTPS, but requested an insecure image ‘http://wiki.slicer.org/slicerWiki/images/f/f6/IntensitySegmenterIcon.png’. This content should also be served over HTTPS.”
[WARNING][Qt] 09.01.2025 09:33:40 (unknown:0) - Mixed Content: The page at ‘@KitwareMedical/slicer-extensions-webapp’ was loaded over HTTPS, but requested an insecure image ‘http://wiki.slicer.org/slicerWiki/images/f/f6/IntensitySegmenterIcon.png’. This content should also be served over HTTPS.
[WARNING][Qt] 09.01.2025 09:33:40 (unknown:0) - “@KitwareMedical/slicer-extensions-webapp” 0 “Mixed Content: The page at ‘@KitwareMedical/slicer-extensions-webapp’ was loaded over HTTPS, but requested an insecure image ‘http://www.slicer.org/slicerWiki/images/a/ac/PAAlogo-small.png’. This content should also be served over HTTPS.”
[WARNING][Qt] 09.01.2025 09:33:40 (unknown:0) - Mixed Content: The page at ‘@KitwareMedical/slicer-extensions-webapp’ was loaded over HTTPS, but requested an insecure image ‘http://www.slicer.org/slicerWiki/images/a/ac/PAAlogo-small.png’. This content should also be served over HTTPS.
[WARNING][Qt] 09.01.2025 09:33:40 (unknown:0) - “@KitwareMedical/slicer-extensions-webapp” 0 “Mixed Content: The page at ‘@KitwareMedical/slicer-extensions-webapp’ was loaded over HTTPS, but requested an insecure image ‘http://www.slicer.org/slicerWiki/images/b/ba/SegAidedRegSquareFocus128.png’. This content should also be served over HTTPS.”
[WARNING][Qt] 09.01.2025 09:33:40 (unknown:0) - Mixed Content: The page at ‘@KitwareMedical/slicer-extensions-webapp’ was loaded over HTTPS, but requested an insecure image ‘http://www.slicer.org/slicerWiki/images/b/ba/SegAidedRegSquareFocus128.png’. This content should also be served over HTTPS.
[WARNING][Qt] 09.01.2025 09:33:40 (unknown:0) - “@KitwareMedical/slicer-extensions-webapp” 0 “Mixed Content: The page at ‘@KitwareMedical/slicer-extensions-webapp’ was loaded over HTTPS, but requested an insecure image ‘http://www.example.com/Slicer/Extensions/SlicerSurfaceLearner.png’. This content should also be served over HTTPS.”
[WARNING][Qt] 09.01.2025 09:33:40 (unknown:0) - Mixed Content: The page at ‘@KitwareMedical/slicer-extensions-webapp’ was loaded over HTTPS, but requested an insecure image ‘http://www.example.com/Slicer/Extensions/SlicerSurfaceLearner.png’. This content should also be served over HTTPS.
[WARNING][Qt] 09.01.2025 09:33:40 (unknown:0) - “@KitwareMedical/slicer-extensions-webapp” 0 “Mixed Content: The page at ‘@KitwareMedical/slicer-extensions-webapp’ was loaded over HTTPS, but requested an insecure image ‘http://slicer.org/slicerWiki/images/3/32/T1_Mapping_Logo_Resized.png’. This content should also be served over HTTPS.”
[WARNING][Qt] 09.01.2025 09:33:40 (unknown:0) - Mixed Content: The page at ‘@KitwareMedical/slicer-extensions-webapp’ was loaded over HTTPS, but requested an insecure image ‘http://slicer.org/slicerWiki/images/3/32/T1_Mapping_Logo_Resized.png’. This content should also be served over HTTPS.
[WARNING][Qt] 09.01.2025 09:33:49 (unknown:0) - “@KitwareMedical/slicer-extensions-webapp” 0 “A cookie associated with a cross-site resource at http://www.nitrc.org/ was set without theSameSiteattribute. A future release of Chrome will only deliver cookies with cross-site requests if they are set withSameSite=NoneandSecure. You can review cookies in developer tools under Application>Storage>Cookies and see more details at https://www.chromestatus.com/feature/5088147346030592 and https://www.chromestatus.com/feature/5633521622188032.”
[WARNING][Qt] 09.01.2025 09:33:49 (unknown:0) - A cookie associated with a cross-site resource at http://www.nitrc.org/ was set without theSameSiteattribute. A future release of Chrome will only deliver cookies with cross-site requests if they are set withSameSite=NoneandSecure. You can review cookies in developer tools under Application>Storage>Cookies and see more details at https://www.chromestatus.com/feature/5088147346030592 and https://www.chromestatus.com/feature/5633521622188032.
Blockquote
Thanks
