Problems loading dicom file

Support
1

Operating system: windows10
Slicer version: 4.10.2
Expected behavior:
Actual behavior:

Hello, first of all, sorry for my English, it is translated by google. I need help with some dicom files that I am unable to load, I have looked a lot around here and I have done several actions, but I cannot load it, I need it to work with it and make it 3D printed. I beg your help, thank you!

Error: could not load: as a 21 frames multivolume by image position pantie + adquisition time as a multivolume.

could not load: 1: unnamed series as a scalar volume

2

This is always a good place to start: https://www.slicer.org/wiki/Documentation/Nightly/FAQ/DICOM

3

Hello again, he managed to load the files but selecting any data when incorporating the folder with the files, if I select to load the directory in the DICOM database, I get the multivolume error, he said, I’ve tried everything what you have advised me.

Once loaded, the image appears in the first box, and a flat image in the second and third. Then I try to create the 3D model, but it creates a flat image, will it be a problem with the files? because I already tried for many hours and days and you won’t get the 3D model.

Thank you !!

4

Unless you are able to share the data we can only guess what might be wrong. Probably is not a format that is compatible with Slicer (DICOM has many variations) or maybe the data is corrupt.

5

Good morning, then I paste the message that throws me. Thank you!

[DEBUG][Qt] 11.03.2020 10:13:53 [] (unknown:0) - Session start time …: 2020-03-11 10:13:53
[DEBUG][Qt] 11.03.2020 10:13:53 [] (unknown:0) - Slicer version …: 4.10.2 (revision 28257) win-amd64 - installed release
[DEBUG][Qt] 11.03.2020 10:13:53 [] (unknown:0) - Operating system …: Windows / Professional / (Build 9200) - 64-bit
[DEBUG][Qt] 11.03.2020 10:13:53 [] (unknown:0) - Memory …: 12252 MB physical, 18689 MB virtual
[DEBUG][Qt] 11.03.2020 10:13:53 [] (unknown:0) - CPU …: GenuineIntel , 4 cores, 4 logical processors
[DEBUG][Qt] 11.03.2020 10:13:53 [] (unknown:0) - VTK configuration …: OpenGL2 rendering, TBB threading
[DEBUG][Qt] 11.03.2020 10:13:53 [] (unknown:0) - Developer mode enabled …: no
[DEBUG][Qt] 11.03.2020 10:13:53 [] (unknown:0) - Prefer executable CLI …: yes
[DEBUG][Qt] 11.03.2020 10:13:53 [] (unknown:0) - Additional module paths …: (none)
[DEBUG][Python] 11.03.2020 10:14:01 [Python] (C:\Program Files\Slicer 4.10.2\lib\Slicer-4.10\qt-scripted-modules\SubjectHierarchyPlugins\AbstractScriptedSubjectHierarchyPlugin.py:36) - Scripted subject hierarchy plugin registered: Annotations
[DEBUG][Python] 11.03.2020 10:14:02 [Python] (C:\Program Files\Slicer 4.10.2\lib\Slicer-4.10\qt-scripted-modules\SubjectHierarchyPlugins\AbstractScriptedSubjectHierarchyPlugin.py:36) - Scripted subject hierarchy plugin registered: SegmentEditor
[DEBUG][Python] 11.03.2020 10:14:02 [Python] (C:\Program Files\Slicer 4.10.2\lib\Slicer-4.10\qt-scripted-modules\SubjectHierarchyPlugins\AbstractScriptedSubjectHierarchyPlugin.py:36) - Scripted subject hierarchy plugin registered: SegmentStatistics
[DEBUG][Qt] 11.03.2020 10:14:02 [] (unknown:0) - Switch to module: “Welcome”
[DEBUG][Qt] 11.03.2020 10:14:49 [] (unknown:0) - Switch to module: “DICOM”
[DEBUG][Qt] 11.03.2020 10:14:49 [] (unknown:0) - New patient inserted: 3
[DEBUG][Qt] 11.03.2020 10:14:49 [] (unknown:0) - New patient inserted as : 3
[DEBUG][Qt] 11.03.2020 10:14:49 [] (unknown:0) - Need to insert new study: “1.2.410.200001.101.11.501.1501431310.1.20200213164927794”
[DEBUG][Qt] 11.03.2020 10:14:49 [] (unknown:0) - Study Added
[DEBUG][Qt] 11.03.2020 10:14:49 [] (unknown:0) - Need to insert new series: “1.2.410.200001.101.11.501.1501431310.2.20200213165249399”
[DEBUG][Qt] 11.03.2020 10:14:49 [] (unknown:0) - Series Added
[DEBUG][Qt] 11.03.2020 10:14:50 [] (unknown:0) - “DICOM indexer has successfully processed 26 files [1.00s]”
[INFO][Python] 11.03.2020 10:14:51 [Python] (C:\Program Files\Slicer 4.10.2\lib\Slicer-4.10\qt-scripted-modules\DICOMLib\DICOMWidgets.py:471) - Imported a DICOM directory, checking for extensions
[INFO][Stream] 11.03.2020 10:14:51 [] (unknown:0) - Imported a DICOM directory, checking for extensions
[DEBUG][Python] 11.03.2020 10:14:58 [Python] (C:/Program Files/Slicer 4.10.2/bin/…/lib/Slicer-4.10/qt-scripted-modules/MultiVolumeImporterPlugin.py:455) - MultiVolumeImportPlugin::examine
[DEBUG][Python] 11.03.2020 10:14:58 [Python] (C:/Program Files/Slicer 4.10.2/bin/…/lib/Slicer-4.10/qt-scripted-modules/MultiVolumeImporterPlugin.py:495) - DICOMMultiVolumePlugin found 2 multivolumes!
[DEBUG][Python] 11.03.2020 10:14:58 [Python] (C:/Program Files/Slicer 4.10.2/bin/…/lib/Slicer-4.10/qt-scripted-modules/MultiVolumeImporterPlugin.py:165) - MultiVolumeImportPlugin:examineMultiseries
[DEBUG][Python] 11.03.2020 10:14:58 [Python] (C:/Program Files/Slicer 4.10.2/bin/…/lib/Slicer-4.10/qt-scripted-modules/MultiVolumeImporterPlugin.py:170) - DICOMMultiVolumePlugin found 1 multivolumes!
[INFO][Python] 11.03.2020 10:14:59 [Python] (C:/Program Files/Slicer 4.10.2/bin/…/lib/Slicer-4.10/qt-scripted-modules/DICOMScalarVolumePlugin.py:303) - Loading with imageIOName: GDCM
[ERROR][Python] 11.03.2020 10:14:59 [Python] (C:/Program Files/Slicer 4.10.2/bin/…/lib/Slicer-4.10/qt-scripted-modules/DICOMScalarVolumePlugin.py:309) - Could not read scalar volume using GDCM approach. Error is: FileFormatError
[INFO][Python] 11.03.2020 10:14:59 [Python] (C:/Program Files/Slicer 4.10.2/bin/…/lib/Slicer-4.10/qt-scripted-modules/DICOMScalarVolumePlugin.py:303) - Loading with imageIOName: DCMTK
[ERROR][Python] 11.03.2020 10:14:59 [Python] (C:/Program Files/Slicer 4.10.2/bin/…/lib/Slicer-4.10/qt-scripted-modules/DICOMScalarVolumePlugin.py:309) - Could not read scalar volume using DCMTK approach. Error is: FileFormatError
[ERROR][Python] 11.03.2020 10:14:59 [Python] (C:/Program Files/Slicer 4.10.2/bin/…/lib/Slicer-4.10/qt-scripted-modules/MultiVolumeImporterPlugin.py:728) - Failed to read a multivolume: ‘NoneType’ object has no attribute ‘GetImageData’
[WARNING][Python] 11.03.2020 10:14:59 [Python] (C:\Program Files\Slicer 4.10.2\bin\Python\slicer\util.py:1110) -
Could not load: - as a 22 frames MultiVolume by ImagePositionPatient+AcquisitionTime as a MultiVolume
[INFO][Stream] 11.03.2020 10:14:59 [] (unknown:0) - Loading with imageIOName: GDCM
[ERROR][VTK] 11.03.2020 10:14:59 [vtkITKArchetypeImageSeriesScalarReader (000002BF40C21260)] (D:\D\S\Slicer-4102\Libs\vtkITK\vtkITKArchetypeImageSeriesScalarReader.cxx:230) - UpdateFromFile: Unsupported number of components (only 1 allowed): 3
[CRITICAL][Stream] 11.03.2020 10:14:59 [] (unknown:0) - Could not read scalar volume using GDCM approach. Error is: FileFormatError
[INFO][Stream] 11.03.2020 10:14:59 [] (unknown:0) - Loading with imageIOName: DCMTK
[CRITICAL][Stream] 11.03.2020 10:14:59 [] (unknown:0) - D:\D\S\Slicer-4102-build\ITK\Modules\ThirdParty\VNL\src\vxl\core\vnl/algo/vnl_svd.hxx: suspicious return value (3) from SVDC
[CRITICAL][Stream] 11.03.2020 10:14:59 [] (unknown:0) - D:\D\S\Slicer-4102-build\ITK\Modules\ThirdParty\VNL\src\vxl\core\vnl/algo/vnl_svd.hxx: M is 3x3
[CRITICAL][Stream] 11.03.2020 10:14:59 [] (unknown:0) - M = [ …
[CRITICAL][Stream] 11.03.2020 10:14:59 [] (unknown:0) - 0.0000000000000 -nan 0
[CRITICAL][Stream] 11.03.2020 10:14:59 [] (unknown:0) - 0 -nan 0
[CRITICAL][Stream] 11.03.2020 10:14:59 [] (unknown:0) - 0 -nan 0.0000000000000 ]
[ERROR][VTK] 11.03.2020 10:14:59 [vtkITKArchetypeImageSeriesScalarReader (000002BF40C23A40)] (D:\D\S\Slicer-4102\Libs\vtkITK\vtkITKArchetypeImageSeriesScalarReader.cxx:230) - UpdateFromFile: Unsupported number of components (only 1 allowed): 3
[CRITICAL][Stream] 11.03.2020 10:14:59 [] (unknown:0) - Could not read scalar volume using DCMTK approach. Error is: FileFormatError
[CRITICAL][Stream] 11.03.2020 10:14:59 [] (unknown:0) - Failed to read a multivolume: ‘NoneType’ object has no attribute ‘GetImageData’
[CRITICAL][Stream] 11.03.2020 10:14:59 [] (unknown:0) - Traceback (most recent call last):
[CRITICAL][Stream] 11.03.2020 10:14:59 [] (unknown:0) - File “C:/Program Files/Slicer 4.10.2/bin/…/lib/Slicer-4.10/qt-scripted-modules/MultiVolumeImporterPlugin.py”, line 619, in load
[CRITICAL][Stream] 11.03.2020 10:14:59 [] (unknown:0) - if frame.GetImageData() == None:
[CRITICAL][Stream] 11.03.2020 10:14:59 [] (unknown:0) - AttributeError: ‘NoneType’ object has no attribute ‘GetImageData’
[CRITICAL][Stream] 11.03.2020 10:14:59 [] (unknown:0) -
[CRITICAL][Stream] 11.03.2020 10:14:59 [] (unknown:0) - Could not load: - as a 22 frames MultiVolume by ImagePositionPatient+AcquisitionTime as a MultiVolume
[INFO][Stream] 11.03.2020 10:15:03 [] (unknown:0) - selected row 0
[INFO][Stream] 11.03.2020 10:15:03 [] (unknown:0) - Today: for HERRERA ROMERO^CRISTINA
[INFO][Stream] 11.03.2020 10:15:03 [] (unknown:0) - selected row 0
[INFO][Stream] 11.03.2020 10:15:03 [] (unknown:0) - Today: for HERRERA ROMERO^CRISTINA
[DEBUG][Python] 11.03.2020 10:15:04 [Python] (C:/Program Files/Slicer 4.10.2/bin/…/lib/Slicer-4.10/qt-scripted-modules/MultiVolumeImporterPlugin.py:455) - MultiVolumeImportPlugin::examine
[DEBUG][Python] 11.03.2020 10:15:04 [Python] (C:/Program Files/Slicer 4.10.2/bin/…/lib/Slicer-4.10/qt-scripted-modules/MultiVolumeImporterPlugin.py:495) - DICOMMultiVolumePlugin found 2 multivolumes!
[DEBUG][Python] 11.03.2020 10:15:04 [Python] (C:/Program Files/Slicer 4.10.2/bin/…/lib/Slicer-4.10/qt-scripted-modules/MultiVolumeImporterPlugin.py:165) - MultiVolumeImportPlugin:examineMultiseries
[DEBUG][Python] 11.03.2020 10:15:04 [Python] (C:/Program Files/Slicer 4.10.2/bin/…/lib/Slicer-4.10/qt-scripted-modules/MultiVolumeImporterPlugin.py:170) - DICOMMultiVolumePlugin found 1 multivolumes!
[INFO][Python] 11.03.2020 10:16:03 [Python] (C:/Program Files/Slicer 4.10.2/bin/…/lib/Slicer-4.10/qt-scripted-modules/DICOMScalarVolumePlugin.py:303) - Loading with imageIOName: GDCM
[ERROR][Python] 11.03.2020 10:16:03 [Python] (C:/Program Files/Slicer 4.10.2/bin/…/lib/Slicer-4.10/qt-scripted-modules/DICOMScalarVolumePlugin.py:309) - Could not read scalar volume using GDCM approach. Error is: FileFormatError
[INFO][Python] 11.03.2020 10:16:04 [Python] (C:/Program Files/Slicer 4.10.2/bin/…/lib/Slicer-4.10/qt-scripted-modules/DICOMScalarVolumePlugin.py:303) - Loading with imageIOName: DCMTK
[ERROR][Python] 11.03.2020 10:16:04 [Python] (C:/Program Files/Slicer 4.10.2/bin/…/lib/Slicer-4.10/qt-scripted-modules/DICOMScalarVolumePlugin.py:309) - Could not read scalar volume using DCMTK approach. Error is: FileFormatError
[ERROR][Python] 11.03.2020 10:16:04 [Python] (C:/Program Files/Slicer 4.10.2/bin/…/lib/Slicer-4.10/qt-scripted-modules/MultiVolumeImporterPlugin.py:728) - Failed to read a multivolume: ‘NoneType’ object has no attribute ‘GetImageData’
[WARNING][Python] 11.03.2020 10:16:04 [Python] (C:\Program Files\Slicer 4.10.2\bin\Python\slicer\util.py:1110) -
Could not load: - as a 22 frames MultiVolume by ImagePositionPatient+AcquisitionTime as a MultiVolume
[INFO][Stream] 11.03.2020 10:16:03 [] (unknown:0) - Loading with imageIOName: GDCM
[ERROR][VTK] 11.03.2020 10:16:03 [vtkITKArchetypeImageSeriesScalarReader (000002BF40C219A0)] (D:\D\S\Slicer-4102\Libs\vtkITK\vtkITKArchetypeImageSeriesScalarReader.cxx:230) - UpdateFromFile: Unsupported number of components (only 1 allowed): 3
[CRITICAL][Stream] 11.03.2020 10:16:04 [] (unknown:0) - Could not read scalar volume using GDCM approach. Error is: FileFormatError
[INFO][Stream] 11.03.2020 10:16:04 [] (unknown:0) - Loading with imageIOName: DCMTK
[CRITICAL][Stream] 11.03.2020 10:16:04 [] (unknown:0) - D:\D\S\Slicer-4102-build\ITK\Modules\ThirdParty\VNL\src\vxl\core\vnl/algo/vnl_svd.hxx: suspicious return value (3) from SVDC
[CRITICAL][Stream] 11.03.2020 10:16:04 [] (unknown:0) - D:\D\S\Slicer-4102-build\ITK\Modules\ThirdParty\VNL\src\vxl\core\vnl/algo/vnl_svd.hxx: M is 3x3
[CRITICAL][Stream] 11.03.2020 10:16:04 [] (unknown:0) - M = [ …
[CRITICAL][Stream] 11.03.2020 10:16:04 [] (unknown:0) - 0.0000000000000 -nan 0
[CRITICAL][Stream] 11.03.2020 10:16:04 [] (unknown:0) - 0 -nan 0
[CRITICAL][Stream] 11.03.2020 10:16:04 [] (unknown:0) - 0 -nan 0.0000000000000 ]
[ERROR][VTK] 11.03.2020 10:16:04 [vtkITKArchetypeImageSeriesScalarReader (000002BF40C23A40)] (D:\D\S\Slicer-4102\Libs\vtkITK\vtkITKArchetypeImageSeriesScalarReader.cxx:230) - UpdateFromFile: Unsupported number of components (only 1 allowed): 3
[CRITICAL][Stream] 11.03.2020 10:16:04 [] (unknown:0) - Could not read scalar volume using DCMTK approach. Error is: FileFormatError
[CRITICAL][Stream] 11.03.2020 10:16:04 [] (unknown:0) - Failed to read a multivolume: ‘NoneType’ object has no attribute ‘GetImageData’
[CRITICAL][Stream] 11.03.2020 10:16:04 [] (unknown:0) - Traceback (most recent call last):
[CRITICAL][Stream] 11.03.2020 10:16:04 [] (unknown:0) - File “C:/Program Files/Slicer 4.10.2/bin/…/lib/Slicer-4.10/qt-scripted-modules/MultiVolumeImporterPlugin.py”, line 619, in load
[CRITICAL][Stream] 11.03.2020 10:16:04 [] (unknown:0) - if frame.GetImageData() == None:
[CRITICAL][Stream] 11.03.2020 10:16:04 [] (unknown:0) - AttributeError: ‘NoneType’ object has no attribute ‘GetImageData’
[CRITICAL][Stream] 11.03.2020 10:16:04 [] (unknown:0) -
[CRITICAL][Stream] 11.03.2020 10:16:04 [] (unknown:0) - Could not load: - as a 22 frames MultiVolume by ImagePositionPatient+AcquisitionTime as a MultiVolume