Volume registration is started in working directory: /var/folders/lv/f_t6f0ys1x34xd03xcdprbym0000gq/T/Slicer/Elastix/20200420_194355_170
Register volumes…
elastix is started at Mon Apr 20 19:43:55 2020.
which elastix: /Applications/Slicer.app/Contents/Extensions-28989/SlicerElastix/lib/Slicer-4.11/elastix
elastix runs at: Fs-MacBook-Pro.local
Mac OS X 10.14.6 (x64), 18G3020
with 8192 MB memory, and 2 cores @ 2900 MHz.
Running elastix with parameter file 0: “/Applications/Slicer.app/Contents/Extensions-28989/SlicerElastix/lib/Slicer-4.11/qt-scripted-modules/Resources/RegistrationParameters/Parameters_Rigid.txt”.
Current time: Mon Apr 20 19:43:55 2020.
Reading the elastix parameters from file …
Installing all components.
InstallingComponents was successful.
ELASTIX version: 5.000
Command line options from ElastixBase:
-f /var/folders/lv/f_t6f0ys1x34xd03xcdprbym0000gq/T/Slicer/Elastix/20200420_194355_170/input/fixed.mha
-m /var/folders/lv/f_t6f0ys1x34xd03xcdprbym0000gq/T/Slicer/Elastix/20200420_194355_170/input/moving.mha
-fMask unspecified, so no fixed mask used
-mMask unspecified, so no moving mask used
-out /var/folders/lv/f_t6f0ys1x34xd03xcdprbym0000gq/T/Slicer/Elastix/20200420_194355_170/result-transform/
-p /Applications/Slicer.app/Contents/Extensions-28989/SlicerElastix/lib/Slicer-4.11/qt-scripted-modules/Resources/RegistrationParameters/Parameters_Rigid.txt
-p /Applications/Slicer.app/Contents/Extensions-28989/SlicerElastix/lib/Slicer-4.11/qt-scripted-modules/Resources/RegistrationParameters/Parameters_BSpline.txt
-threads unspecified, so all available threads are used
WARNING: The parameter “UseDirectionCosines”, requested at entry number 0, does not exist at all.
The default value “true” is used instead.
WARNING: The option “UseDirectionCosines” was not found in your parameter file.
From elastix 4.8 it defaults to true!
This may change the behavior of your registrations considerably.
Command line options from TransformBase:
-t0 unspecified, so no initial transform used
Reading images…
Reading images took 150 ms.
WARNING: the fixed pyramid schedule is not fully specified!
A default pyramid schedule is used.
WARNING: the moving pyramid schedule is not fully specified!
A default pyramid schedule is used.
WARNING: The parameter “AutomaticTransformInitializationMethod”, requested at entry number 0, does not exist at all.
The default value “GeometricalCenter” is used instead.
Transform parameters are initialized as: [0, 0, 0, -1.5244374302985904, -24.311078731531566, -14.602596841435947]
Scales are estimated automatically.
Scales for transform parameters are: [3772.2559831259255, 3825.3517771192674, 5551.213166583119, 1, 1, 1]
Initialization of all components (before registration) took: 19 ms.
Preparation of the image pyramids took: 1777 ms.
Resolution: 0
WARNING: The parameter “ShowExactMetricValue”, requested at entry number 0, does not exist at all.
The default value “false” is used instead.
WARNING: The parameter “CheckNumberOfSamples”, requested at entry number 0, does not exist at all.
The default value “true” is used instead.
WARNING: The parameter “UseMultiThreadingForMetrics”, requested at entry number 0, does not exist at all.
The default value “true” is used instead.
Setting the fixed masks took: 0 ms.
Setting the moving masks took: 0 ms.
WARNING: The parameter “NumberOfFixedHistogramBins”, requested at entry number 0, does not exist at all.
The default value “32” is used instead.
WARNING: The parameter “NumberOfMovingHistogramBins”, requested at entry number 0, does not exist at all.
The default value “32” is used instead.
WARNING: The parameter “FixedLimitRangeRatio”, requested at entry number 0, does not exist at all.
The default value “0.01” is used instead.
WARNING: The parameter “MovingLimitRangeRatio”, requested at entry number 0, does not exist at all.
The default value “0.01” is used instead.
WARNING: The parameter “FixedKernelBSplineOrder”, requested at entry number 0, does not exist at all.
The default value “0” is used instead.
WARNING: The parameter “MovingKernelBSplineOrder”, requested at entry number 0, does not exist at all.
The default value “3” is used instead.
WARNING: The parameter “UseFastAndLowMemoryVersion”, requested at entry number 0, does not exist at all.
The default value “true” is used instead.
WARNING: The parameter “UseJacobianPreconditioning”, requested at entry number 0, does not exist at all.
The default value “false” is used instead.
WARNING: The parameter “FiniteDifferenceDerivative”, requested at entry number 0, does not exist at all.
The default value “false” is used instead.
WARNING: The parameter “SP_A”, requested at entry number 0, does not exist at all.
The default value “20” is used instead.
WARNING: The parameter “MaximumNumberOfSamplingAttempts”, requested at entry number 0, does not exist at all.
The default value “0” is used instead.
WARNING: The parameter “SigmoidInitialTime”, requested at entry number 0, does not exist at all.
The default value “0” is used instead.
WARNING: The parameter “MaxBandCovSize”, requested at entry number 0, does not exist at all.
The default value “192” is used instead.
WARNING: The parameter “NumberOfBandStructureSamples”, requested at entry number 0, does not exist at all.
The default value “10” is used instead.
WARNING: The parameter “UseAdaptiveStepSizes”, requested at entry number 0, does not exist at all.
The default value “true” is used instead.
WARNING: The parameter “AutomaticParameterEstimation”, requested at entry number 0, does not exist at all.
The default value “true” is used instead.
WARNING: The parameter “UseConstantStep”, requested at entry number 0, does not exist at all.
The default value “false” is used instead.
WARNING: The parameter “MaximumStepLengthRatio”, requested at entry number 0, does not exist at all.
The default value “1” is used instead.
WARNING: The parameter “MaximumStepLength”, requested at entry number 0, does not exist at all.
The default value “0.449219” is used instead.
WARNING: The parameter “NumberOfGradientMeasurements”, requested at entry number 0, does not exist at all.
The default value “0” is used instead.
WARNING: The parameter “NumberOfJacobianMeasurements”, requested at entry number 0, does not exist at all.
The default value “1000” is used instead.
WARNING: The parameter “NumberOfSamplesForExactGradient”, requested at entry number 0, does not exist at all.
The default value “100000” is used instead.
WARNING: The parameter “SigmoidScaleFactor”, requested at entry number 0, does not exist at all.
The default value “0.1” is used instead.
Elastix initialization of all components (for this resolution) took: 2 ms.
Computing the fixed image extrema took 1 ms.
Computing the moving image extrema took 0 ms.
Initialization of AdvancedMattesMutualInformation metric took: 5 ms.
Starting automatic parameter estimation for AdaptiveStochasticGradientDescent …
WARNING: The parameter “ASGDParameterEstimationMethod”, requested at entry number 0, does not exist at all.
The default value “Original” is used instead.
Computing JacobianTerms …
Computing the Jacobian terms took 0.004218s
NumberOfGradientMeasurements to estimate sigma_i: 6
Sampling gradients …
Progress: 0%Time spent in resolution 0 (ITK initialization and iterating): 0.017 s.
Stopping condition: Error in metric.
Settings of AdaptiveStochasticGradientDescent in resolution 0:
( SP_a 1.000000 )
( SP_A 20.000000 )
( SP_alpha 0.602000 )
( SigmoidMax 1.000000 )
( SigmoidMin -0.800000 )
( SigmoidScale 0.000000 )
itk::ExceptionObject (0x7fa16184a1d0)
Location: “ElastixTemplate - Run()”
File: /Volumes/Dashboards/Preview/S-0-E-b/SlicerElastix-build/elastix/Common/CostFunctions/itkAdvancedImageToImageMetric.hxx
Line: 1007
Description: itk::ERROR: itk::ERROR: AdvancedMattesMutualInformationMetric(0x7fa160840800): Too many samples map outside moving image buffer: 2203 / 16384
Error occurred during actual registration.
Errors occurred!
vtkDebugLeaks has found no leaks.
Error: Command ‘elastix’ returned non-zero exit status 1.