By current spacing 720x720px so (720, 720, 4) ?
Hi Andras, I don’t need an exact output size, I’m just trying to work on getting my volume down to a smaller size so I can serve it across the internet. (Working with large datasets)
One method I haven’t tried yet which would I imagine help a lot is reducing the number of images in the z-plane, hence the above discussion.
So in summary my overall pipeline is to
- reduce number of images in the z-plane using above method
- crop the volume to just the region of interest
- rescale images to a more reasonable size (around 256x256 or 300x300 px)
- save as nrrd or mrda
and see where that gets me =)
PS I didn’t realise crop volume could also resize, any tutorials on using?