I uploaded a CT dicom image set into Slicer and segmented a region of interest. Now, I would like to save both my input volume and segmentation into a single file (preferably .nrrd). Is there a way I am able to do this? I have attempted to export my segmentation as a labelmap; however, this only sa…

If by “included” you mean the segmentation overlayed in color on the CT, then the Screen Capture module can work. But it will export png as 24 bit rgb that won’t be the best for learning. Better to use nrrd files for the CT and segmentation individually at full bit depth – have a look at MONAI for…

Segmentation of CT Dicoms

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Topic		Replies	Views
Saving a segmentation and input volume in one file Support segmentation , dicom	3	426	January 27, 2022
How save segmentation data? Support segmentation	5	1711	June 4, 2019
Read Dicom label map and export .nrrd label map Support segmentation , dicom , nrrd , labelmap	3	908	January 23, 2021
3D slicer's segmented output for convolutional neural network training Support segmentation	6	1232	October 15, 2020
Save segmentation output as xml file or binary mask Support	4	2423	February 6, 2019

Segmentation of CT Dicoms

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