I am new to 3D slicer. I am working on a research project that needs to extract the skull sutures. I was able to used manually to approximate them. I used “shift” to make the sutures more evident. I was wondering if there is a plugin that can help me to visualise and extract the sutures automatically?
Please have a look at this topic:
If you have further questions then let us know, describing in more details what you mean by “extract the skull suture” (do you need to just mark the suture lines or split the bone along sutures?) and what you mean by “I used shift to make the sutures more evident” (what did you shift?).
Thanks a lot for your prompt reply. I want to extract the sutures curves in 3D automatically. There is an option called “shift” at the left panel. It helped me to make them more evident. But, I still have to manually segment. I tried “he curve follow minimal bone density” but it did not work out for me as I have to use a lot of markdowns.
The curve can follow minimum bone density very well, so it should be enough to drop only a few points. Setting up is not trivial (you need to segment the bone, export to model, then use Probe volume with model to get bone density mapped to the model, then use that intensity for minimal cost path search), so probably it is worth automating this using a short Python script.
What is the overall goal of the project? Depending on that, there could be other, simpler solutions.
Thanks a lot. I will try these steps. I appreciate your help.