Hello, I have encountered some problems recently. I want to rebulid the volume image from a “.tre” file to show the refine image. I use itk to complete this work, and it works perfect in the conda env. However, when I run it in my Slicer extension, it shows: TemplateImageType: <class 'itk.itkImage…

The entire code is as follows： import itk from itk import TubeTK as ttk def treTomask(rootpath, ctpath): ctpath='' print('start treTomask') PixelType = itk.F Dimension = 3 ImageType = itk.Image[PixelType, Dimension] # # Read tre file TubeFileReaderType = itk.Spa…

By the way, I try subprocess, like this: subprocess.run('/mnt2/homes/xingyul/anaconda3/envs/labelsys/bin/python /mnt2/homes/xingyul/xinyul/Slicer/vessel_connect/infer_tools_tree/result/test.py', shell=True) but it seems doesn’t work ： Traceback (most recent call last): File "/mnt2/homes/xingyul…

Thanks for reply！I have successfully fixed it by subprocess, but I’d like to try your suggestion.

The problem of itk.ImageFileReader

Development

pieper (Steve Pieper (Isomics, Inc.)) November 26, 2021, 2:02pm 4

This thread should help: Slicer crashes when creating h5 file - #3 by szymswiat

Topic		Replies	Views
Failing Slicer Extension Test - ITK cannot load test image Development	6	1531	September 26, 2017
sitkUtils.PullVolumeFromSlicer makes Slicer crash Development bug	45	1856	February 13, 2020
ALPACA "import itk" error Support	3	127	June 6, 2024
Slicer crashes when creating h5 file Support bug , python	4	637	September 21, 2021
SimpleITK import error Support	25	4431	March 2, 2021

The problem of itk.ImageFileReader

Related topics