Threshold masking

prorai · May 17, 2019, 12:53pm

How can i apply threshold for masking in segmentation process, using python code?

lassoan · May 17, 2019, 12:55pm

See examples of using segment editor from Python scripts in the script repository.

prorai · May 17, 2019, 2:54pm

gist.github.com

https://gist.github.com/lassoan/2d5a5b73645f65a5eb6f8d5f97abf31b

SegmentGrowCutSimple.py

# Generate input data
################################################

import SampleData

# Load master volume
sampleDataLogic = SampleData.SampleDataLogic()
masterVolumeNode = sampleDataLogic.downloadMRBrainTumor1()

# Create segmentation

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I’m using this seed grow example but i want to use threshold masking with this ,
i tried effect.self().onUseForPaint() and its not working

prorai · May 21, 2019, 2:39pm

Hi @lassoan , i tried seed grow with masking(applying threshold for paint) , and it works if i put the python code in python interactor in slicer .

same code i have added in my scriptable module and seed grow works normally but i’m not seeing masking is applied before seefGrow.

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Threshold masking

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