I am trying to use the python interface to load a (float) scalar volume in the form of a signed distance field want to apply thresholdscalarvolume to generate a label map with everything below 0.0. It doesn’t seem to be working in terms of creating the label map and running the cli interface. her…

You can create a segmentation from thresholded input volumeNode like this: volumeNode = ... thresholdValue = 80 # Create temporary labelmap labelVolumeNode = slicer.mrmlScene.AddNewNodeByClass("vtkMRMLLabelMapVolumeNode") slicer.vtkSlicerVolumesLogic().CreateLabelVolumeFromVolume(slicer.mrmlScene,…

Threshold scalar volume to labelmap

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lassoan (Andras Lasso) Split this topic June 4, 2021, 1:34pm 13

A post was split to a new topic: How to get intensity range of a volume?

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Threshold scalar volume to labelmap

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