Hi Lassoan I have tried the cpu without fast option selected. It exited with status 120 after predicting part 1/5. Is there a workaround? Thank you. Regards Lip Teck

Most likely your installation is corrupted. We have improved robustness of TotalSegmentator installation recently, so reinstallation from scratch may fix the problem. Please remove your Slicer installation completely, then install Slicer and TotalSegmentator again. If it did not fix the issue then …

Hi Lassoan, After uninstallaing and re-installing, the fast option went well but without fast it failed with exit 120. Here’s the slicer’s error: Traceback (most recent call last): File “/home/lipteck/Slicer-5.2.1-linux-amd64/bin/Python/slicer/util.py”, line 2961, in tryWithErrorDisplay yield F…

[image] LipTeck_Chew: FileNotFoundError: [Errno 2] No such file or directory: ‘/home/lipteck/.totalsegmentator/nnunet/results/nnUNet/3d_fullres/Task252_TotalSegmentator_part2_vertebrae_1139subj/nnUNetTrainerV2_ep4000_nomirror__nnUNetPlansv2.1/fold_0/model_final_checkpoint.model.pkl’ It seems …

Hi Lassoan I removed the .totalsegmentator in my home directory with rm -rf command and it is now working. Thank you! By the way, is there any plan to segment structures - the organs at risk frequently used in radiation treatment planning by body section? Regards Lip Teck

We are planning a session at the upcoming Project Week to discuss TotalSegmentator and related machine learning segmentation tools, so you may want to join that discussion to see where things are headed and add your wishlist for future segmentation features.

TotalSegmentator fails with error 120

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TotalSegmentator fails with error 120

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