Any suggestions on why the segment is like this?
[DEBUG][Qt] 14.06.2026 13:36:34 (unknown:0) - Session start time …: 20260614_133634
[DEBUG][Qt] 14.06.2026 13:36:34 (unknown:0) - Slicer version …: 5.10.0 (revision 34045 / a2b6d08) win-amd64 - installed release
[DEBUG][Qt] 14.06.2026 13:36:34 (unknown:0) - Operating system …: Windows / Personal / (Build 26200, Code Page 65001) - 64-bit
[DEBUG][Qt] 14.06.2026 13:36:34 (unknown:0) - Memory …: 63232 MB physical, 72448 MB virtual
[DEBUG][Qt] 14.06.2026 13:36:34 (unknown:0) - CPU …: AuthenticAMD AMD Ryzen 9 8945HS w/ Radeon 780M Graphics, 16 cores, 16 logical processors
[DEBUG][Qt] 14.06.2026 13:36:34 (unknown:0) - VTK configuration …: OpenGL2 rendering, TBB threading
[DEBUG][Qt] 14.06.2026 13:36:34 (unknown:0) - Qt configuration …: version 5.15.2, with SSL, requested OpenGL 3.2 (core profile)
[DEBUG][Qt] 14.06.2026 13:36:34 (unknown:0) - DCMTK configuration …: version 3.6.8, no SSL
[DEBUG][Qt] 14.06.2026 13:36:34 (unknown:0) - Internationalization …: enabled, language=
[DEBUG][Qt] 14.06.2026 13:36:34 (unknown:0) - Developer mode …: disabled
[DEBUG][Qt] 14.06.2026 13:36:34 (unknown:0) - Application path …: D:/3DSlicer510/bin
[DEBUG][Qt] 14.06.2026 13:36:34 (unknown:0) - Additional module paths ..: slicer.org/Extensions-34045/PyTorch/lib/Slicer-5.10/qt-scripted-modules, slicer.org/Extensions-34045/NNUNet/lib/Slicer-5.10/qt-scripted-modules, slicer.org/Extensions-34045/SlicerPythonTestRunner/lib/Slicer-5.10/qt-scripted-modules, slicer.org/Extensions-34045/TotalSegmentator/lib/Slicer-5.10/qt-scripted-modules
[INFO][Stream] 14.06.2026 13:36:35 (unknown:0) -
[WARNING][Python] 14.06.2026 13:36:36 [Python] (D:\3DSlicer510\lib\Python\Lib\site-packages\pydicom\misc.py:82) - get_frame_offsets is deprecated and will be removed in v4.0
[DEBUG][Python] 14.06.2026 13:36:37 [Python] (D:\3DSlicer510\lib\Slicer-5.10\qt-scripted-modules\SubjectHierarchyPlugins\AbstractScriptedSubjectHierarchyPlugin.py:40) - Scripted subject hierarchy plugin registered: SegmentEditor
[DEBUG][Python] 14.06.2026 13:36:37 [Python] (D:\3DSlicer510\lib\Slicer-5.10\qt-scripted-modules\SubjectHierarchyPlugins\AbstractScriptedSubjectHierarchyPlugin.py:40) - Scripted subject hierarchy plugin registered: SegmentStatistics
[DEBUG][Qt] 14.06.2026 13:36:37 (unknown:0) - Switch to module: “Welcome”
[DEBUG][Qt] 14.06.2026 13:36:40 (unknown:0) - Switch to module: “DICOM”
[INFO][Python] 14.06.2026 13:36:52 [Python] (D:/3DSlicer510/bin/../lib/Slicer-5.10/qt-scripted-modules/DICOMScalarVolumePlugin.py:445) - Loading with imageIOName: GDCM
[WARNING][ITK] 14.06.2026 13:36:54 (unknown:0) - WARNING: In C:\D\S\S-0-build\ITK\Modules\IO\ImageBase\include\itkImageSeriesReader.hxx, line 478
ImageSeriesReader (0000024CD4A2FDB0): Non uniform sampling or missing slices detected, maximum nonuniformity:0.000250045
[DEBUG][Python] 14.06.2026 13:36:55 [Python] (D:/3DSlicer510/bin/../lib/Slicer-5.10/qt-scripted-modules/DICOMScalarVolumePlugin.py:567) - DICOM window/level (40.0/300.0) set to volume ‘204: CT SOFT_512x512 90min’ from SOP instance 1.3.6.1.4.1.14519.5.2.1.319576169887040151064629310950896265349.
[DEBUG][Python] 14.06.2026 13:36:55 [Python] (D:/3DSlicer510/bin/../lib/Slicer-5.10/qt-scripted-modules/DICOMScalarVolumePlugin.py:944) - Irregular volume geometry detected, but maximum error is within tolerance (maximum error of 0.000143692 mm, tolerance threshold is 0.001 mm).
[DEBUG][Qt] 14.06.2026 13:36:58 (unknown:0) - Switch to module: “CropVolume”
[INFO][VTK] 14.06.2026 13:37:29 [vtkSlicerCLIModuleLogic (0000024CC171A100)] (C:\D\S\S-0\Base\Logic\vtkSlicerCLIModuleLogic.cxx:844) - Found CommandLine Module, target is D:/3DSlicer510/bin/../lib/Slicer-5.10/cli-modules/ResampleScalarVectorDWIVolume.exe
[INFO][VTK] 14.06.2026 13:37:29 [vtkSlicerCLIModuleLogic (0000024CC171A100)] (C:\D\S\S-0\Base\Logic\vtkSlicerCLIModuleLogic.cxx:862) - ModuleType: CommandLineModule
[INFO][VTK] 14.06.2026 13:37:29 [vtkSlicerCLIModuleLogic (0000024CC171A100)] (C:\D\S\S-0\Base\Logic\vtkSlicerCLIModuleLogic.cxx:1690) - Resample Scalar/Vector/DWI Volume command line:
D:/3DSlicer510/bin/../lib/Slicer-5.10/cli-modules/ResampleScalarVectorDWIVolume.exe --hfieldtype h-Field --interpolation linear --transform_order output-to-input --image_center input --spacing 0.48828125,0.48828125,0.48828125 --size 524,639,725 --origin 115.779,154.273,2003.54 --direction_matrix -1,0,0,0,-1,0,0,0,1 --number_of_thread 0 --default_pixel_value 0 --window_function c --spline_order 3 --transform_matrix 1,0,0,0,1,0,0,0,1,0,0,0 --transform a C:/Users/amanl/AppData/Local/Temp/Slicer/BFAGI_vtkMRMLScalarVolumeNodeB.nrrd C:/Users/amanl/AppData/Local/Temp/Slicer/BFAGI_vtkMRMLScalarVolumeNodeC.nrrd
[INFO][VTK] 14.06.2026 13:37:32 [vtkSlicerCLIModuleLogic (0000024CC171A100)] (C:\D\S\S-0\Base\Logic\vtkSlicerCLIModuleLogic.cxx:1894) - Resample Scalar/Vector/DWI Volume completed without errors
[DEBUG][Qt] 14.06.2026 13:37:38 (unknown:0) - Switch to module: “TotalSegmentator”
[INFO][Python] 14.06.2026 13:37:56 [Python] (D:\3DSlicer510\lib\Python\Lib\site-packages\numexpr\utils.py:164) - NumExpr defaulting to 16 threads.
[INFO][Python] 14.06.2026 13:38:24 [Python] (D:/3DSlicer510/slicer.org/Extensions-34045/PyTorch/lib/Slicer-5.10/qt-scripted-modules/PyTorchUtils.py:153) - Importing torch…
[INFO][Python] 14.06.2026 13:38:26 [Python] (D:/3DSlicer510/slicer.org/Extensions-34045/PyTorch/lib/Slicer-5.10/qt-scripted-modules/PyTorchUtils.py:190) - PyTorch 2.12.0+cu126 imported successfully
[INFO][Python] 14.06.2026 13:38:26 [Python] (D:/3DSlicer510/slicer.org/Extensions-34045/PyTorch/lib/Slicer-5.10/qt-scripted-modules/PyTorchUtils.py:191) - CUDA available: True
[INFO][Python] 14.06.2026 13:38:26 [Python] (D:/3DSlicer510/slicer.org/Extensions-34045/TotalSegmentator/lib/Slicer-5.10/qt-scripted-modules/TotalSegmentator.py:690) - Processing started
[INFO][Python] 14.06.2026 13:38:26 [Python] (D:/3DSlicer510/slicer.org/Extensions-34045/TotalSegmentator/lib/Slicer-5.10/qt-scripted-modules/TotalSegmentator.py:690) - Writing input file to C:/Users/amanl/AppData/Local/Temp/Slicer/__SlicerTemp__2026-06-14_13+38+26.322/total-segmentator-input.nii
[INFO][Python] 14.06.2026 13:38:26 [Python] (D:/3DSlicer510/slicer.org/Extensions-34045/TotalSegmentator/lib/Slicer-5.10/qt-scripted-modules/TotalSegmentator.py:690) - Creating segmentations with TotalSegmentator AI…
[INFO][Python] 14.06.2026 13:38:26 [Python] (D:/3DSlicer510/slicer.org/Extensions-34045/TotalSegmentator/lib/Slicer-5.10/qt-scripted-modules/TotalSegmentator.py:690) - Total Segmentator arguments: [‘-i’, ‘C:/Users/amanl/AppData/Local/Temp/Slicer/__SlicerTemp__2026-06-14_13+38+26.322/total-segmentator-input.nii’, ‘-o’, ‘C:/Users/amanl/AppData/Local/Temp/Slicer/__SlicerTemp__2026-06-14_13+38+26.322/segmentation’, ‘–device’, ‘gpu’, ‘–ml’, ‘–task’, ‘craniofacial_structures’, ‘–robust_crop’, ‘–higher_order_resampling’]
[INFO][Python] 14.06.2026 13:38:48 [Python] (D:/3DSlicer510/slicer.org/Extensions-34045/TotalSegmentator/lib/Slicer-5.10/qt-scripted-modules/TotalSegmentator.py:690) -
[INFO][Python] 14.06.2026 13:38:49 [Python] (D:/3DSlicer510/slicer.org/Extensions-34045/TotalSegmentator/lib/Slicer-5.10/qt-scripted-modules/TotalSegmentator.py:690) - 0%| | 0/2 [00:00<?, ?it/s]
[INFO][Python] 14.06.2026 13:38:49 [Python] (D:/3DSlicer510/slicer.org/Extensions-34045/TotalSegmentator/lib/Slicer-5.10/qt-scripted-modules/TotalSegmentator.py:690) - 50%|##### | 1/2 [00:01<00:01, 1.29s/it]
[INFO][Python] 14.06.2026 13:38:49 [Python] (D:/3DSlicer510/slicer.org/Extensions-34045/TotalSegmentator/lib/Slicer-5.10/qt-scripted-modules/TotalSegmentator.py:690) - 100%|##########| 2/2 [00:01<00:00, 1.54it/s]
[INFO][Python] 14.06.2026 13:39:26 [Python] (D:/3DSlicer510/slicer.org/Extensions-34045/TotalSegmentator/lib/Slicer-5.10/qt-scripted-modules/TotalSegmentator.py:690) -
[INFO][Python] 14.06.2026 13:39:28 [Python] (D:/3DSlicer510/slicer.org/Extensions-34045/TotalSegmentator/lib/Slicer-5.10/qt-scripted-modules/TotalSegmentator.py:690) - 0%| | 0/250 [00:00<?, ?it/s]
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[INFO][Python] 14.06.2026 13:39:28 [Python] (D:/3DSlicer510/slicer.org/Extensions-34045/TotalSegmentator/lib/Slicer-5.10/qt-scripted-modules/TotalSegmentator.py:690) - 2%|2 | 6/250 [00:01<00:46, 5.23it/s]
[INFO][Python] 14.06.2026 13:39:28 [Python] (D:/3DSlicer510/slicer.org/Extensions-34045/TotalSegmentator/lib/Slicer-5.10/qt-scripted-modules/TotalSegmentator.py:690) - 4%|3 | 9/250 [00:01<00:34, 6.91it/s]
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[INFO][Python] 14.06.2026 13:39:29 [Python] (D:/3DSlicer510/slicer.org/Extensions-34045/TotalSegmentator/lib/Slicer-5.10/qt-scripted-modules/TotalSegmentator.py:690) - 5%|5 | 13/250 [00:02<00:26, 8.81it/s]
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[INFO][Python] 14.06.2026 13:39:34 [Python] (D:/3DSlicer510/slicer.org/Extensions-34045/TotalSegmentator/lib/Slicer-5.10/qt-scripted-modules/TotalSegmentator.py:690) - 29%|##9 | 73/250 [00:06<00:14, 12.38it/s]
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[INFO][Python] 14.06.2026 13:39:40 [Python] (D:/3DSlicer510/slicer.org/Extensions-34045/TotalSegmentator/lib/Slicer-5.10/qt-scripted-modules/TotalSegmentator.py:690) - 59%|#####8 | 147/250 [00:13<00:08, 12.05it/s]
[INFO][Python] 14.06.2026 13:39:40 [Python] (D:/3DSlicer510/slicer.org/Extensions-34045/TotalSegmentator/lib/Slicer-5.10/qt-scripted-modules/TotalSegmentator.py:690) - 60%|#####9 | 149/250 [00:13<00:08, 12.18it/s]
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[INFO][Python] 14.06.2026 13:39:41 [Python] (D:/3DSlicer510/slicer.org/Extensions-34045/TotalSegmentator/lib/Slicer-5.10/qt-scripted-modules/TotalSegmentator.py:690) - 64%|######3 | 159/250 [00:14<00:07, 12.26it/s]
[INFO][Python] 14.06.2026 13:39:41 [Python] (D:/3DSlicer510/slicer.org/Extensions-34045/TotalSegmentator/lib/Slicer-5.10/qt-scripted-modules/TotalSegmentator.py:690) - 64%|######4 | 161/250 [00:14<00:07, 12.15it/s]
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[INFO][Python] 14.06.2026 13:39:41 [Python] (D:/3DSlicer510/slicer.org/Extensions-34045/TotalSegmentator/lib/Slicer-5.10/qt-scripted-modules/TotalSegmentator.py:690) - 67%|######6 | 167/250 [00:14<00:06, 12.27it/s]
[INFO][Python] 14.06.2026 13:39:41 [Python] (D:/3DSlicer510/slicer.org/Extensions-34045/TotalSegmentator/lib/Slicer-5.10/qt-scripted-modules/TotalSegmentator.py:690) - 68%|######7 | 169/250 [00:14<00:06, 12.41it/s]
[INFO][Python] 14.06.2026 13:39:42 [Python] (D:/3DSlicer510/slicer.org/Extensions-34045/TotalSegmentator/lib/Slicer-5.10/qt-scripted-modules/TotalSegmentator.py:690) - 68%|######8 | 171/250 [00:14<00:06, 12.19it/s]
[INFO][Python] 14.06.2026 13:39:42 [Python] (D:/3DSlicer510/slicer.org/Extensions-34045/TotalSegmentator/lib/Slicer-5.10/qt-scripted-modules/TotalSegmentator.py:690) - 69%|######9 | 173/250 [00:15<00:06, 12.32it/s]
[INFO][Python] 14.06.2026 13:39:42 [Python] (D:/3DSlicer510/slicer.org/Extensions-34045/TotalSegmentator/lib/Slicer-5.10/qt-scripted-modules/TotalSegmentator.py:690) - 70%|####### | 175/250 [00:15<00:06, 12.11it/s]
[INFO][Python] 14.06.2026 13:39:42 [Python] (D:/3DSlicer510/slicer.org/Extensions-34045/TotalSegmentator/lib/Slicer-5.10/qt-scripted-modules/TotalSegmentator.py:690) - 71%|####### | 177/250 [00:15<00:05, 12.26it/s]
[INFO][Python] 14.06.2026 13:39:42 [Python] (D:/3DSlicer510/slicer.org/Extensions-34045/TotalSegmentator/lib/Slicer-5.10/qt-scripted-modules/TotalSegmentator.py:690) - 72%|#######1 | 179/250 [00:15<00:05, 12.39it/s]
[INFO][Python] 14.06.2026 13:39:42 [Python] (D:/3DSlicer510/slicer.org/Extensions-34045/TotalSegmentator/lib/Slicer-5.10/qt-scripted-modules/TotalSegmentator.py:690) - 72%|#######2 | 181/250 [00:15<00:05, 12.19it/s]
[INFO][Python] 14.06.2026 13:39:43 [Python] (D:/3DSlicer510/slicer.org/Extensions-34045/TotalSegmentator/lib/Slicer-5.10/qt-scripted-modules/TotalSegmentator.py:690) - 73%|#######3 | 183/250 [00:15<00:05, 12.34it/s]
[INFO][Python] 14.06.2026 13:39:43 [Python] (D:/3DSlicer510/slicer.org/Extensions-34045/TotalSegmentator/lib/Slicer-5.10/qt-scripted-modules/TotalSegmentator.py:690) - 74%|#######4 | 185/250 [00:16<00:05, 12.07it/s]
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[INFO][Python] 14.06.2026 13:39:44 [Python] (D:/3DSlicer510/slicer.org/Extensions-34045/TotalSegmentator/lib/Slicer-5.10/qt-scripted-modules/TotalSegmentator.py:690) - 79%|#######8 | 197/250 [00:17<00:04, 12.11it/s]
[INFO][Python] 14.06.2026 13:39:44 [Python] (D:/3DSlicer510/slicer.org/Extensions-34045/TotalSegmentator/lib/Slicer-5.10/qt-scripted-modules/TotalSegmentator.py:690) - 80%|#######9 | 199/250 [00:17<00:04, 12.27it/s]
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[INFO][Python] 14.06.2026 13:39:44 [Python] (D:/3DSlicer510/slicer.org/Extensions-34045/TotalSegmentator/lib/Slicer-5.10/qt-scripted-modules/TotalSegmentator.py:690) - 83%|########2 | 207/250 [00:17<00:03, 12.31it/s]
[INFO][Python] 14.06.2026 13:39:45 [Python] (D:/3DSlicer510/slicer.org/Extensions-34045/TotalSegmentator/lib/Slicer-5.10/qt-scripted-modules/TotalSegmentator.py:690) - 84%|########3 | 209/250 [00:18<00:03, 12.41it/s]
[INFO][Python] 14.06.2026 13:39:45 [Python] (D:/3DSlicer510/slicer.org/Extensions-34045/TotalSegmentator/lib/Slicer-5.10/qt-scripted-modules/TotalSegmentator.py:690) - 84%|########4 | 211/250 [00:18<00:03, 12.15it/s]
[INFO][Python] 14.06.2026 13:39:45 [Python] (D:/3DSlicer510/slicer.org/Extensions-34045/TotalSegmentator/lib/Slicer-5.10/qt-scripted-modules/TotalSegmentator.py:690) - 85%|########5 | 213/250 [00:18<00:03, 12.33it/s]
[INFO][Python] 14.06.2026 13:39:45 [Python] (D:/3DSlicer510/slicer.org/Extensions-34045/TotalSegmentator/lib/Slicer-5.10/qt-scripted-modules/TotalSegmentator.py:690) - 86%|########6 | 215/250 [00:18<00:02, 12.11it/s]
[INFO][Python] 14.06.2026 13:39:45 [Python] (D:/3DSlicer510/slicer.org/Extensions-34045/TotalSegmentator/lib/Slicer-5.10/qt-scripted-modules/TotalSegmentator.py:690) - 87%|########6 | 217/250 [00:18<00:02, 12.27it/s]
[INFO][Python] 14.06.2026 13:39:45 [Python] (D:/3DSlicer510/slicer.org/Extensions-34045/TotalSegmentator/lib/Slicer-5.10/qt-scripted-modules/TotalSegmentator.py:690) - 88%|########7 | 219/250 [00:18<00:02, 12.14it/s]
[INFO][Python] 14.06.2026 13:39:46 [Python] (D:/3DSlicer510/slicer.org/Extensions-34045/TotalSegmentator/lib/Slicer-5.10/qt-scripted-modules/TotalSegmentator.py:690) - 88%|########8 | 221/250 [00:19<00:02, 12.25it/s]
[INFO][Python] 14.06.2026 13:39:46 [Python] (D:/3DSlicer510/slicer.org/Extensions-34045/TotalSegmentator/lib/Slicer-5.10/qt-scripted-modules/TotalSegmentator.py:690) - 89%|########9 | 223/250 [00:19<00:02, 12.44it/s]
[INFO][Python] 14.06.2026 13:39:46 [Python] (D:/3DSlicer510/slicer.org/Extensions-34045/TotalSegmentator/lib/Slicer-5.10/qt-scripted-modules/TotalSegmentator.py:690) - 90%|######### | 225/250 [00:19<00:02, 12.24it/s]
[INFO][Python] 14.06.2026 13:39:46 [Python] (D:/3DSlicer510/slicer.org/Extensions-34045/TotalSegmentator/lib/Slicer-5.10/qt-scripted-modules/TotalSegmentator.py:690) - 91%|######### | 227/250 [00:19<00:01, 12.35it/s]
[INFO][Python] 14.06.2026 13:39:46 [Python] (D:/3DSlicer510/slicer.org/Extensions-34045/TotalSegmentator/lib/Slicer-5.10/qt-scripted-modules/TotalSegmentator.py:690) - 92%|#########1| 229/250 [00:19<00:01, 12.18it/s]
[INFO][Python] 14.06.2026 13:39:46 [Python] (D:/3DSlicer510/slicer.org/Extensions-34045/TotalSegmentator/lib/Slicer-5.10/qt-scripted-modules/TotalSegmentator.py:690) - 92%|#########2| 231/250 [00:19<00:01, 12.30it/s]
[INFO][Python] 14.06.2026 13:39:47 [Python] (D:/3DSlicer510/slicer.org/Extensions-34045/TotalSegmentator/lib/Slicer-5.10/qt-scripted-modules/TotalSegmentator.py:690) - 93%|#########3| 233/250 [00:20<00:01, 12.17it/s]
[INFO][Python] 14.06.2026 13:39:47 [Python] (D:/3DSlicer510/slicer.org/Extensions-34045/TotalSegmentator/lib/Slicer-5.10/qt-scripted-modules/TotalSegmentator.py:690) - 94%|#########3| 235/250 [00:20<00:01, 12.35it/s]
[INFO][Python] 14.06.2026 13:39:47 [Python] (D:/3DSlicer510/slicer.org/Extensions-34045/TotalSegmentator/lib/Slicer-5.10/qt-scripted-modules/TotalSegmentator.py:690) - 95%|#########4| 237/250 [00:20<00:01, 12.12it/s]
[INFO][Python] 14.06.2026 13:39:47 [Python] (D:/3DSlicer510/slicer.org/Extensions-34045/TotalSegmentator/lib/Slicer-5.10/qt-scripted-modules/TotalSegmentator.py:690) - 96%|#########5| 239/250 [00:20<00:00, 12.36it/s]
[INFO][Python] 14.06.2026 13:39:47 [Python] (D:/3DSlicer510/slicer.org/Extensions-34045/TotalSegmentator/lib/Slicer-5.10/qt-scripted-modules/TotalSegmentator.py:690) - 96%|#########6| 241/250 [00:20<00:00, 12.16it/s]
[INFO][Python] 14.06.2026 13:39:47 [Python] (D:/3DSlicer510/slicer.org/Extensions-34045/TotalSegmentator/lib/Slicer-5.10/qt-scripted-modules/TotalSegmentator.py:690) - 97%|#########7| 243/250 [00:20<00:00, 12.35it/s]
[INFO][Python] 14.06.2026 13:39:48 [Python] (D:/3DSlicer510/slicer.org/Extensions-34045/TotalSegmentator/lib/Slicer-5.10/qt-scripted-modules/TotalSegmentator.py:690) - 98%|#########8| 245/250 [00:21<00:00, 12.09it/s]
[INFO][Python] 14.06.2026 13:39:48 [Python] (D:/3DSlicer510/slicer.org/Extensions-34045/TotalSegmentator/lib/Slicer-5.10/qt-scripted-modules/TotalSegmentator.py:690) - 99%|#########8| 247/250 [00:21<00:00, 12.32it/s]
[INFO][Python] 14.06.2026 13:39:48 [Python] (D:/3DSlicer510/slicer.org/Extensions-34045/TotalSegmentator/lib/Slicer-5.10/qt-scripted-modules/TotalSegmentator.py:690) - 100%|#########9| 249/250 [00:21<00:00, 12.14it/s]
[INFO][Python] 14.06.2026 13:39:48 [Python] (D:/3DSlicer510/slicer.org/Extensions-34045/TotalSegmentator/lib/Slicer-5.10/qt-scripted-modules/TotalSegmentator.py:690) - 100%|##########| 250/250 [00:21<00:00, 11.66it/s]
[INFO][Python] 14.06.2026 13:40:19 [Python] (D:/3DSlicer510/slicer.org/Extensions-34045/TotalSegmentator/lib/Slicer-5.10/qt-scripted-modules/TotalSegmentator.py:690) -
[INFO][Python] 14.06.2026 13:40:19 [Python] (D:/3DSlicer510/slicer.org/Extensions-34045/TotalSegmentator/lib/Slicer-5.10/qt-scripted-modules/TotalSegmentator.py:690) - If you use this tool please cite: https://pubs.rsna.org/doi/10.1148/ryai.230024
[INFO][Python] 14.06.2026 13:40:19 [Python] (D:/3DSlicer510/slicer.org/Extensions-34045/TotalSegmentator/lib/Slicer-5.10/qt-scripted-modules/TotalSegmentator.py:690) -
[INFO][Python] 14.06.2026 13:40:19 [Python] (D:/3DSlicer510/slicer.org/Extensions-34045/TotalSegmentator/lib/Slicer-5.10/qt-scripted-modules/TotalSegmentator.py:690) - Generating rough segmentation for cropping…
[INFO][Python] 14.06.2026 13:40:19 [Python] (D:/3DSlicer510/slicer.org/Extensions-34045/TotalSegmentator/lib/Slicer-5.10/qt-scripted-modules/TotalSegmentator.py:690) - (Using more robust (but slower) 3mm model for cropping.)
[INFO][Python] 14.06.2026 13:40:19 [Python] (D:/3DSlicer510/slicer.org/Extensions-34045/TotalSegmentator/lib/Slicer-5.10/qt-scripted-modules/TotalSegmentator.py:690) - Resampling…
[INFO][Python] 14.06.2026 13:40:19 [Python] (D:/3DSlicer510/slicer.org/Extensions-34045/TotalSegmentator/lib/Slicer-5.10/qt-scripted-modules/TotalSegmentator.py:690) - Resampled in 5.34s
[INFO][Python] 14.06.2026 13:40:19 [Python] (D:/3DSlicer510/slicer.org/Extensions-34045/TotalSegmentator/lib/Slicer-5.10/qt-scripted-modules/TotalSegmentator.py:690) - Predicting…
[INFO][Python] 14.06.2026 13:40:19 [Python] (D:/3DSlicer510/slicer.org/Extensions-34045/TotalSegmentator/lib/Slicer-5.10/qt-scripted-modules/TotalSegmentator.py:690) - Predicted in 14.52s
[INFO][Python] 14.06.2026 13:40:19 [Python] (D:/3DSlicer510/slicer.org/Extensions-34045/TotalSegmentator/lib/Slicer-5.10/qt-scripted-modules/TotalSegmentator.py:690) - Resampling…
[INFO][Python] 14.06.2026 13:40:19 [Python] (D:/3DSlicer510/slicer.org/Extensions-34045/TotalSegmentator/lib/Slicer-5.10/qt-scripted-modules/TotalSegmentator.py:690) - cropping from (524, 639, 725) to (372, 476, 581)
[INFO][Python] 14.06.2026 13:40:19 [Python] (D:/3DSlicer510/slicer.org/Extensions-34045/TotalSegmentator/lib/Slicer-5.10/qt-scripted-modules/TotalSegmentator.py:690) - Resampling…
[INFO][Python] 14.06.2026 13:40:19 [Python] (D:/3DSlicer510/slicer.org/Extensions-34045/TotalSegmentator/lib/Slicer-5.10/qt-scripted-modules/TotalSegmentator.py:690) - Resampled in 16.81s
[INFO][Python] 14.06.2026 13:40:19 [Python] (D:/3DSlicer510/slicer.org/Extensions-34045/TotalSegmentator/lib/Slicer-5.10/qt-scripted-modules/TotalSegmentator.py:690) - Predicting…
[INFO][Python] 14.06.2026 13:40:19 [Python] (D:/3DSlicer510/slicer.org/Extensions-34045/TotalSegmentator/lib/Slicer-5.10/qt-scripted-modules/TotalSegmentator.py:690) - Predicted in 39.11s
[INFO][Python] 14.06.2026 13:40:19 [Python] (D:/3DSlicer510/slicer.org/Extensions-34045/TotalSegmentator/lib/Slicer-5.10/qt-scripted-modules/TotalSegmentator.py:690) - Resampling…
[INFO][Python] 14.06.2026 13:40:19 [Python] (D:/3DSlicer510/slicer.org/Extensions-34045/TotalSegmentator/lib/Slicer-5.10/qt-scripted-modules/TotalSegmentator.py:690) - Saving segmentations…
[INFO][Python] 14.06.2026 13:40:19 [Python] (D:/3DSlicer510/slicer.org/Extensions-34045/TotalSegmentator/lib/Slicer-5.10/qt-scripted-modules/TotalSegmentator.py:690) - Saved in 2.69s
[INFO][Python] 14.06.2026 13:40:20 [Python] (D:/3DSlicer510/slicer.org/Extensions-34045/TotalSegmentator/lib/Slicer-5.10/qt-scripted-modules/TotalSegmentator.py:690) - Importing segmentation results…
[INFO][VTK] 14.06.2026 13:40:20 [vtkMRMLSegmentationStorageNode (0000024D79349490)] (C:\D\S\S-0\Libs\MRML\Core\vtkMRMLSegmentationStorageNode.cxx:608) - ReferenceImageExtentOffset attribute was not found in NRRD segmentation file. Assume no offset.
[INFO][Python] 14.06.2026 13:40:21 [Python] (D:/3DSlicer510/slicer.org/Extensions-34045/TotalSegmentator/lib/Slicer-5.10/qt-scripted-modules/TotalSegmentator.py:690) - Processing completed in 114.95 seconds
[INFO][Python] 14.06.2026 13:40:21 [Python] (D:/3DSlicer510/slicer.org/Extensions-34045/TotalSegmentator/lib/Slicer-5.10/qt-scripted-modules/TotalSegmentator.py:690) - Cleaning up temporary folder…
