When I click apply, fast mode, it gives the below error:
No GPU detected. Running on CPU. This can be very slow. The '--fast' option can help to some extend.
Using 'fast' option: resampling to lower resolution (3mm)
Resampling...
Resampled in 0.10s
Predicting...
Predicted in 4.10s
Traceback (most recent call last):
File "C:\Users\sabe848\AppData\Local\slicer.org\Slicer 5.4.0\lib\Python\Lib\site-packages\nibabel\loadsave.py", line 100, in load
stat_result = os.stat(filename)
FileNotFoundError: [WinError 2] The system cannot find the file specified: 'C:\\Users\\sabe848\\AppData\\Local\\Temp\\nnunet_tmp_3xtp4mqi\\s01.nii.gz'
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "C:\Users\sabe848\AppData\Local\slicer.org\Slicer 5.4.0\lib\Python\Scripts\TotalSegmentator", line 93, in <module>
main()
File "C:\Users\sabe848\AppData\Local\slicer.org\Slicer 5.4.0\lib\Python\Scripts\TotalSegmentator", line 86, in main
totalsegmentator(args.input, args.output, args.ml, args.nr_thr_resamp, args.nr_thr_saving,
File "C:\Users\sabe848\AppData\Local\slicer.org\Slicer 5.4.0\lib\Python\Lib\site-packages\totalsegmentator\python_api.py", line 173, in totalsegmentator
seg = nnUNet_predict_image(input, output, task_id, model=model, folds=folds,
File "C:\Users\sabe848\AppData\Local\slicer.org\Slicer 5.4.0\lib\Python\Lib\site-packages\totalsegmentator\nnunet.py", line 272, in nnUNet_predict_image
img_pred = nib.load(tmp_dir / "s01.nii.gz")
File "C:\Users\sabe848\AppData\Local\slicer.org\Slicer 5.4.0\lib\Python\Lib\site-packages\nibabel\loadsave.py", line 102, in load
raise FileNotFoundError(f"No such file or no access: '{filename}'")
FileNotFoundError: No such file or no access: 'C:\Users\sabe848\AppData\Local\Temp\nnunet_tmp_3xtp4mqi\s01.nii.gz'