I want to use some kind of logic from it to generate a temporary node to be exported in the preferred coordinate system (in a python function). I know I can create a temporary directory, save the file there, execute the command line and copy the new file to the desired location, but thats awful. I would like more the “logic” way, generating a temporary node and save only one time.
My current script saves the nodes in RAS orientation, I like them in RAI which is the orientation Gate is expecting to perform the simulations.
Yes, that’s the XML file. Command-line arguments and GUI is documented in the Slicer wiki, too, but the parameter names are only described in the XML file (or you can list them using the script linked above).