Dear all Is there a way to avoid console calls in OrientScalarVolume such as OrientImage --orientation Axial ${MRML_DATA}/fixed.nrrd ${TEMP}/OrientImageTestAxial.nrrd as defined in the documentation ? I want to use some kind of logic from it to generate a temporary node to be exported …

Ok I found the solution The OrientScalarVolume is a cli module, so the way is def reorientNode(node, orientation): parameters = {'inputVolume1':node, 'outputVolume':node, 'orientation':orientation} slicer.cli.run(slicer.modules.orientscalarvolume, None, parameters, True) This was pure luc…

Using OrientScalarVolume module in a python script

Development

lassoan (Andras Lasso) Split this topic October 7, 2021, 5:55am 6

A post was split to a new topic: How to get parameters of Segment Editor effects

Topic		Replies	Views
Use orient scaler volume in python interactor for batch processing Development	3	371	November 7, 2022
Convert label map volume into a scalarvolumenode Support	20	3594	July 25, 2018
How to run cast scalar volume module from command line SlicerDMRI	2	661	May 14, 2021
How to get a ROI to fit volume in the Volume Rendering module with python? Support python	12	1542	February 25, 2022
Accessing Vector to Scalar Volume module logic Development	2	384	February 12, 2021

Using OrientScalarVolume module in a python script

Related topics