Dear all Is there a way to avoid console calls in OrientScalarVolume such as OrientImage --orientation Axial ${MRML_DATA}/fixed.nrrd ${TEMP}/OrientImageTestAxial.nrrd as defined in the documentation ? I want to use some kind of logic from it to generate a temporary node to be exported …

Ok I found the solution The OrientScalarVolume is a cli module, so the way is def reorientNode(node, orientation): parameters = {'inputVolume1':node, 'outputVolume':node, 'orientation':orientation} slicer.cli.run(slicer.modules.orientscalarvolume, None, parameters, True) This was pure luc…

Using OrientScalarVolume module in a python script

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lassoan (Andras Lasso) Split this topic October 7, 2021, 5:55am 6

A post was split to a new topic: How to get parameters of Segment Editor effects

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Using OrientScalarVolume module in a python script

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