Problem report for Slicer 4.11.20210226 win-amd64:
Hi there
I cropped a volume and saved everything into a scene. After reloading the scene, I can
only see the 3D rendering of the cropped volume. The rendered original volume does not appear, even though the volume is set to visible. Also I noted that the crop bar is deactivated in the Volume Rendering module for the original volume only (usually this is activated for other volumes). Slice views are normally visible though.
Any suggestions? Thanks.
Logs do not provide much, unfortunately:
[DEBUG][Qt] 13.10.2021 19:28:09 [] (unknown:0) - Session start time …: 2021-10-13 19:28:09
[DEBUG][Qt] 13.10.2021 19:28:09 [] (unknown:0) - Slicer version …: 4.11.20210226 (revision 29738 / 7a593c8) win-amd64 - installed release
[DEBUG][Qt] 13.10.2021 19:28:09 [] (unknown:0) - Operating system …: Windows / Professional / (Build 19042, Code Page 65001) - 64-bit
[DEBUG][Qt] 13.10.2021 19:28:09 [] (unknown:0) - Memory …: 32081 MB physical, 36945 MB virtual
[DEBUG][Qt] 13.10.2021 19:28:09 [] (unknown:0) - CPU …: AuthenticAMD AMD Ryzen 7 PRO 4750U with Radeon Graphics, 16 cores, 16 logical processors
[DEBUG][Qt] 13.10.2021 19:28:09 [] (unknown:0) - VTK configuration …: OpenGL2 rendering, TBB threading
[DEBUG][Qt] 13.10.2021 19:28:09 [] (unknown:0) - Qt configuration …: version 5.15.1, with SSL, requested OpenGL 3.2 (compatibility profile)
[DEBUG][Qt] 13.10.2021 19:28:09 [] (unknown:0) - Developer mode enabled …: no
[DEBUG][Qt] 13.10.2021 19:28:09 [] (unknown:0) - Prefer executable CLI …: yes
[DEBUG][Qt] 13.10.2021 19:28:09 [] (unknown:0) - Application path …: C:/ProgramData/NA-MIC/Slicer 4.11.20210226/bin
[DEBUG][Qt] 13.10.2021 19:28:09 [] (unknown:0) - Additional module paths …: NA-MIC/Extensions-29738/SlicerJupyter/lib/Slicer-4.11/qt-loadable-modules, NA-MIC/Extensions-29738/SlicerJupyter/lib/Slicer-4.11/qt-scripted-modules, NA-MIC/Extensions-29738/SlicerElastix/lib/Slicer-4.11/qt-scripted-modules, NA-MIC/Extensions-29738/SlicerCochlea/lib/Slicer-4.11/qt-scripted-modules, NA-MIC/Extensions-29738/NvidiaAIAssistedAnnotation/lib/Slicer-4.11/qt-scripted-modules
[WARNING][Python] 13.10.2021 19:28:11 [Python] (C:\ProgramData\NA-MIC\Slicer 4.11.20210226\bin\Python\slicer\util.py:2160) - toVTKString is deprecated! Conversion is no longer necessary.
[DEBUG][Python] 13.10.2021 19:28:11 [Python] (C:\ProgramData\NA-MIC\Slicer 4.11.20210226\lib\Python\Lib\site-packages\pydicom\datadict.py:432) - Reversing DICOM dictionary so can look up tag from a keyword…
[CRITICAL][Stream] 13.10.2021 19:28:11 [] (unknown:0) - toVTKString is deprecated! Conversion is no longer necessary.
[DEBUG][Python] 13.10.2021 19:28:13 [Python] (C:\ProgramData\NA-MIC\Slicer 4.11.20210226\lib\Slicer-4.11\qt-scripted-modules\SubjectHierarchyPlugins\AbstractScriptedSubjectHierarchyPlugin.py:36) - Scripted subject hierarchy plugin registered: Annotations
[DEBUG][Python] 13.10.2021 19:28:14 [Python] (C:\ProgramData\NA-MIC\Slicer 4.11.20210226\lib\Slicer-4.11\qt-scripted-modules\SubjectHierarchyPlugins\AbstractScriptedSubjectHierarchyPlugin.py:36) - Scripted subject hierarchy plugin registered: SegmentEditor
[DEBUG][Python] 13.10.2021 19:28:14 [Python] (C:\ProgramData\NA-MIC\Slicer 4.11.20210226\lib\Slicer-4.11\qt-scripted-modules\SubjectHierarchyPlugins\AbstractScriptedSubjectHierarchyPlugin.py:36) - Scripted subject hierarchy plugin registered: SegmentStatistics
[INFO][Python] 13.10.2021 19:28:15 [Python] (C:/ProgramData/NA-MIC/Slicer 4.11.20210226/NA-MIC/Extensions-29738/NvidiaAIAssistedAnnotation/lib/Slicer-4.11/qt-scripted-modules/SegmentEditorNvidiaAIAA.py:32) - This plugin dir: C:/ProgramData/NA-MIC/Slicer 4.11.20210226/NA-MIC/Extensions-29738/NvidiaAIAssistedAnnotation/lib/Slicer-4.11/qt-scripted-modules
[DEBUG][Qt] 13.10.2021 19:28:14 [] (unknown:0) - Switch to module: “Welcome”
[INFO][Stream] 13.10.2021 19:28:15 [] (unknown:0) - This plugin dir: C:/ProgramData/NA-MIC/Slicer 4.11.20210226/NA-MIC/Extensions-29738/NvidiaAIAssistedAnnotation/lib/Slicer-4.11/qt-scripted-modules
[INFO][VTK] 13.10.2021 19:28:16 [vtkMRMLVolumeArchetypeStorageNode (000002C3807AB620)] (D:\D\S\Slicer-1\Libs\MRML\Core\vtkMRMLVolumeArchetypeStorageNode.cxx:509) - Loaded volume from file: C:/Users/steph/AppData/Local/NA-MIC/Slicer/cache/SlicerIO/__BundleLoadTemp-2021-10-13_192815_714/I38-Scene-2021-10-11/Data/ITIDE_I38_preop.nrrd. Dimensions: 512x512x759. Number of components: 1. Pixel type: short.
[INFO][VTK] 13.10.2021 19:28:17 [vtkMRMLVolumeArchetypeStorageNode (000002C3807AAC70)] (D:\D\S\Slicer-1\Libs\MRML\Core\vtkMRMLVolumeArchetypeStorageNode.cxx:509) - Loaded volume from file: C:/Users/steph/AppData/Local/NA-MIC/Slicer/cache/SlicerIO/__BundleLoadTemp-2021-10-13_192815_714/I38-Scene-2021-10-11/Data/ITIDE_I38_postop.nrrd. Dimensions: 512x512x271. Number of components: 1. Pixel type: short.
[INFO][VTK] 13.10.2021 19:28:17 [vtkMRMLVolumeArchetypeStorageNode (000002C3807AAE60)] (D:\D\S\Slicer-1\Libs\MRML\Core\vtkMRMLVolumeArchetypeStorageNode.cxx:509) - Loaded volume from file: C:/Users/steph/AppData/Local/NA-MIC/Slicer/cache/SlicerIO/__BundleLoadTemp-2021-10-13_192815_714/I38-Scene-2021-10-11/Data/CroppedPostop.nrrd. Dimensions: 442x318x251. Number of components: 1. Pixel type: short.
[INFO][VTK] 13.10.2021 19:28:17 [vtkMRMLVolumeArchetypeStorageNode (000002C3807AB810)] (D:\D\S\Slicer-1\Libs\MRML\Core\vtkMRMLVolumeArchetypeStorageNode.cxx:509) - Loaded volume from file: C:/Users/steph/AppData/Local/NA-MIC/Slicer/cache/SlicerIO/__BundleLoadTemp-2021-10-13_192815_714/I38-Scene-2021-10-11/Data/CroppedPreop.nrrd. Dimensions: 374x310x503. Number of components: 1. Pixel type: short.
[INFO][VTK] 13.10.2021 19:28:18 [vtkMRMLVolumeArchetypeStorageNode (000002C3807AB050)] (D:\D\S\Slicer-1\Libs\MRML\Core\vtkMRMLVolumeArchetypeStorageNode.cxx:509) - Loaded volume from file: C:/Users/steph/AppData/Local/NA-MIC/Slicer/cache/SlicerIO/__BundleLoadTemp-2021-10-13_192815_714/I38-Scene-2021-10-11/Data/RegistrationPostop.nrrd. Dimensions: 374x310x503. Number of components: 1. Pixel type: short.
[INFO][VTK] 13.10.2021 19:28:18 [vtkMRMLVolumeArchetypeStorageNode (000002C3807A9CF0)] (D:\D\S\Slicer-1\Libs\MRML\Core\vtkMRMLVolumeArchetypeStorageNode.cxx:509) - Loaded volume from file: C:/Users/steph/AppData/Local/NA-MIC/Slicer/cache/SlicerIO/__BundleLoadTemp-2021-10-13_192815_714/I38-Scene-2021-10-11/Data/BoardPreopPost.nrrd. Dimensions: 374x310x503. Number of components: 1. Pixel type: short.
[DEBUG][Qt] 13.10.2021 19:28:19 [] (unknown:0) - “MRB Slicer Data Bundle” Reader has successfully read the file “C:/project/ITIDE/03-Processing/CT/I38/I38-Scene-2021-10-11.mrb” “[4.06s]”
[INFO][Stream] 13.10.2021 19:28:19 [] (unknown:0) - Loading Slicer RC file [C:/Users/steph/.slicerrc.py]
[DEBUG][Qt] 13.10.2021 19:28:20 [] (unknown:0) - Switch to module: “Data”
[DEBUG][Qt] 13.10.2021 19:28:22 [] (unknown:0) - Switch to module: “VolumeRendering”
[DEBUG][Qt] 13.10.2021 19:28:49 [] (unknown:0) - Switch to module: “Data”
[DEBUG][Qt] 13.10.2021 19:29:00 [] (unknown:0) - Switch to module: “VolumeRendering”