Can we analyze the plant roots and stems and fruits?
pieper
June 7, 2021, 5:58pm
2
Yes, people have done this before and reported good results (you might be able to find some publications on this). If you have good scans then a lot of the same tools should work, like segmentation, vessel analysis, etc.
Thankyou
pieper
June 8, 2021, 5:21pm
4
With this google search I found some good hits:
I might be the odd one out here working on plants. I am new to Slicer and trying to use Scanco microCT 50 for scanning my plant root samples. Would like to know if you are planning to give support for direct import of .AIM/other formats that Scanco imagers generate.
https://www.slicer.org/wiki/Main_Page/SlicerCommunity/2019#Isolating_Phyllotactic_Patterns_Embedded_in_the_Secondary_Growth_of_Sweet_Cherry_.28Prunus_Avium_L..29_Using_Magnetic_Resonance_Imaging