Can we analyze the plant roots and stems and fruits? Dr. Sreenivas Alluri

Yes, people have done this before and reported good results (you might be able to find some publications on this). If you have good scans then a lot of the same tools should work, like segmentation, vessel analysis, etc.

Thankyou Can you provide any journal papers for reference. Thankyou

With <a href="https://www.google.com/search?q=3d+%22slicer%22+plant+roots&sxsrf=ALeKk02c-Iymaz7u9NfEq36UaOaypCT5Rw%3A1623172638740&ei=Hqa_YOPLLJKDtQaKwLOYBg&oq=3d+%22slicer%22+plant+roots&gs_lcp=Cgdnd3Mtd2l6EAMyBAgjECc6BwgjELADECc6BwgAEEcQsANQuUZYqFhgoltoAXACeACAAfMCiAHaBJIBBzAuMi4wLjGYAQCgAQGqAQdnd3Mtd2l6yAEJwAEB&sclient=gws-wiz&ved=0ahUKEwjj0qmkxYjxAhWSQc0KHQrgDGMQ4dUDCA4&uact=5">this google search I found some good hits: [image] Support for .AIM/.isq files generated on Scanco microCT Development I might be the odd one out here working on plants. I am new to Slicer and trying to use Scanco microCT 50 for scanning my plant root samples. Would …

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Analysis of plant stem, roots and froots

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pieper (Steve Pieper (Isomics, Inc.)) June 8, 2021, 5:21pm 4

With this google search I found some good hits:

https://www.slicer.org/wiki/Main_Page/SlicerCommunity/2019#Isolating_Phyllotactic_Patterns_Embedded_in_the_Secondary_Growth_of_Sweet_Cherry_.28Prunus_Avium_L..29_Using_Magnetic_Resonance_Imaging

Topic		Replies	Views
Support for .AIM/.isq files generated on Scanco microCT Development	34	4049	November 12, 2019
Grown from seeds took more than 2 hours Support	14	229	October 20, 2025
Micro CT larvae with soft tissue Support volume-rendering	4	73	June 3, 2026
Vessel quantification from micro-CT images Support	3	610	April 17, 2022
Segmenting the root canal space of the tooth Support	5	598	January 21, 2024

Analysis of plant stem, roots and froots

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