Applying Transform Changes number of stacks on the file

Support
1

Dear Colleagues,

I am registering the Fixed.tiff image to the Moving.tiff image using the Elastix module within 3D Slicer. Both images are 512 × 512 × 381. The registration works well, and after I apply the transform, everything looks perfect in Slicer — I can see the high-precision alignment.

However, when I export and save the transformed moving image as a .tiff file, the number of slices in the Z-dimension increases to 384, and it no longer aligns with the fixed image in ImageJ.

Does anyone have any idea how to fix this problem?

Best regards,

2

You probably need to resample the Moving volume in the space of the Fixed (use the Resample module)