Batch Processing error (output folder empty)

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1

Hi, I am trying to use batch processing but somehow run into some errors that I dont know how to solve.

At first, I tried to run the script with my database and patitents were loaded but the output folders were all empty. I then checked if my dicom are readable and they were fine when loading into Slicer.

And somehoe, this error keeps coming up and nothing could be saved as output.

[VTK] Generic Warning: In D:\D\S\S-0\Libs\MRML\Core\vtkDataFileFormatHelper.cxx, line 237

[VTK] vtkDataFileFormatHelper::GetFileExtensionFromFormatString: please update deprecated extension-only format specifier to ‘File format name (.ext)’ format! Current format string: .nrrd

[VTK] vtkMRMLVolumeArchetypeStorageNode::WriteDataInternal: Error renaming file to C:/Users/Documents/output/3/0 RTSTRUCT MRI_1_HR-CTV.nrrd, renameReturn = -1

[VTK] Generic Warning: In D:\D\S\S-0\Libs\MRML\Core\vtkDataFileFormatHelper.cxx, line 237

[VTK] vtkDataFileFormatHelper::GetFileExtensionFromFormatString: please update deprecated extension-only format specifier to ‘File format name (.ext)’ format! Current format string: .nrrd

[Qt] bool __cdecl qSlicerCoreIOManager::saveNodes(class QString,const class QMap<class QString,class QVariant> &,class vtkMRMLMessageCollection *,class vtkMRMLScene *) error: Saving failed with all writers found for file “output\3/0 RTSTRUCT MRI_1_HR-CTV.nrrd” of type “VolumeFile”

[Python] Failed to save node to file: output\3/0 RTSTRUCT MRI_1_HR-CTV.nrrd

[Python] - Error: Error renaming file to C:/Users/Documents/output/3/0 RTSTRUCT MRI_1_HR-CTV.nrrd, renameReturn = -1

[Python] - Error: Saving failed with all writers found for file ‘output\3/0 RTSTRUCT MRI_1_HR-CTV.nrrd’ of type ‘VolumeFile’.

[Python] Failed to save labelmap: output\3/0 RTSTRUCT MRI_1_HR-CTV.nrrd

What should I do to solve this error?
Tahnk you very much.

2

The problem is that the C:/Users/Documents/output/3/0 RTSTRUCT MRI_1_HR-CTV.nrrd file is not writable. Probably you specified incirrect folder - it sends that the username is missing from the path.

3

I’m sorry if I confused you, I removed user name just in case of privacy but the new folders were created in output path specified except they are all empty folders.

I just wanted to convert dicom to label map and nrrd file.