Build error with itk on ubuntu1804

Development
1

when I build slicer on ubuntu1804 with latest code, some error happens.

[ 74%] Building C object Modules/ThirdParty/HDF5/src/itkhdf5/src/CMakeFiles/hdf5-shared.dir/__/shared/H5Tinit.c.o
In file included from /home/chenrf/Projects/medical/slicer/build/ITK-build/Modules/ThirdParty/HDF5/src/itkhdf5/shared/H5Tinit.c:82:0:
/home/chenrf/Projects/medical/slicer/build/ITK/Modules/ThirdParty/HDF5/src/itkhdf5/src/H5Tpkg.h:23:2: error: #error "Do not include this file outside the H5T package!"
 #error "Do not include this file outside the H5T package!"
  ^~~~~
Modules/ThirdParty/HDF5/src/itkhdf5/src/CMakeFiles/hdf5-shared.dir/build.make:3944: recipe for target 'Modules/ThirdParty/HDF5/src/itkhdf5/src/CMakeFiles/hdf5-shared.dir/__/shared/H5Tinit.c.o' failed
make[5]: *** [Modules/ThirdParty/HDF5/src/itkhdf5/src/CMakeFiles/hdf5-shared.dir/__/shared/H5Tinit.c.o] Error 1
CMakeFiles/Makefile2:6965: recipe for target 'Modules/ThirdParty/HDF5/src/itkhdf5/src/CMakeFiles/hdf5-shared.dir/all' failed
make[4]: *** [Modules/ThirdParty/HDF5/src/itkhdf5/src/CMakeFiles/hdf5-shared.dir/all] Error 2
make[4]: *** Waiting for unfinished jobs....

ITK:

$ git branch
* (HEAD detached at 35e6f54643)
  welcome

Slicer:

git reflog
aa245a9d5 (HEAD -> master, origin/master, origin/HEAD) HEAD@{0}: pull: Fast-forward
ced36e5fa (origin/nightly-master) HEAD@{1}: pull: Fast-forward
1b7888e90 HEAD@{2}: pull: Fast-forward

cmake

 cmake --version
cmake version 3.15.0

CMake suite maintained and supported by Kitware (kitware.com/cmake).

How can I fix this bug?

2

In file included from /home/chenrf/Projects/medical/slicer/build/ITK-build/Modules/ThirdParty/HDF5/src/itkhdf5/shared/H5Tinit.c:82:0:
/home/chenrf/Projects/medical/slicer/build/ITK/Modules/ThirdParty/HDF5/src/itkhdf5/src/H5Tpkg.h:23:2: error: error “Do not include this file outside the H5T package!”
error “Do not include this file outside the H5T package!”
^~~~~
Modules/ThirdParty/HDF5/src/itkhdf5/src/CMakeFiles/hdf5-shared.dir/build.make:3944: recipe for target 'Modules/ThirdParty/HDF5/src/itkhdf5/src/CMakeFiles/hdf5-shared.dir//shared/H5Tinit.c.o’ failed
make[5]: *** [Modules/ThirdParty/HDF5/src/itkhdf5/src/CMakeFiles/hdf5-shared.dir//shared/H5Tinit.c.o] Error 1
CMakeFiles/Makefile2:6965: recipe for target ‘Modules/ThirdParty/HDF5/src/itkhdf5/src/CMakeFiles/hdf5-shared.dir/all’ failed
make[4]: *** [Modules/ThirdParty/HDF5/src/itkhdf5/src/CMakeFiles/hdf5-shared.dir/all] Error 2
make[4]: *** Waiting for unfinished jobs…

image
image1005×159 11.3 KB

@all

What can I do to fit this build ITK error?

3

You can see on the dashboard that Slicer builds without problems on Linux. Maybe try with the same tools as used on the dashboard computer (CMake version, compiler, etc.), and maybe also try to uninstall any system ITK, VTK, HDF5 libraries.