Sure!
The steps are the following:
- Create a Python env and install MONAI Label
pip install monailabel- Download the apps: radiology and/or monaibundle
monailabel apps --download --name monaibundle --output ./- Within the app folder, execute the main Python file specifying the model and folder where the image(s) are located
Example command for the radiology app:
python main.py -s /tmp/MONAILabelTest/sampleTest/ --model segmentation --test infer- show the predictions saved in test_labels folder
Here I created two videos showing how this can be done. I assumed the env with MONAI Label is already created.
For the radiology app:
For the monaibundle app:
In addition to the typical MONAI Label models (deepedit, segmentation, vertebra), users can also run the following models from the Model Zoo:
spleen_ct_segmentation
pancreas_ct_dints_segmentation
spleen_deepedit_annotation
swin_unetr_btcv_segmentation
renalStructures_UNEST_segmentation
wholeBrainSeg_Large_UNEST_segmentation
prostate_mri_anatomy
lung_nodule_ct_detection
wholeBody_ct_segmentation
Please let me know your thoughts. Happy to explain more about any of the steps presented here in the videos.