I am new to 3D slicer and I am currently testing it to segment bone. I just downloaded the Total segmentator extention and tried to apply it to a CT of two legs. When the prosess finished it curiously only chose the femur, but I also need the tibia, fibia and the foot. Does anyone know why this happen? What do I need to do for it to also segment the rest?
I am using slicer version 5.2.2
Unofrtunately, lower extremitties are only available in the paying version of TotalSegmentator.
Ok, thank you.
Where would I find the prices for these applications?
Please contact Jakob Wasserthal, as far as we know there are academic licenses available too.
His email is in this text.
You may also consider retraining the whole-body CT segmentation model freely available in the MONAI model zoo: model-zoo/models/wholeBody_ct_segmentation at dev · Project-MONAI/model-zoo · GitHub
You could take advantage of the active learning capabilities of the MONAI Label library to get a model for the lower extremities segmentation.
We could consider presenting this as a Slicer project: NA-MIC Project Weeks | Website for NA-MIC Project Weeks
Happy to help. Let me know.