Hello,
I cannot seem to get ALPACA to open for me. I have tried to follow the tips from other discussions to get pip installed. Now it says there is an update and I can’t figure out how to update it via python or any other means. Slicer will sit on the screen saying it is upgrading open3d. This will take a minute… and not advance (see attached). Python console dialoge is copied and pasted below.
Python 3.9.10 (main, Dec 6 2022, 23:29:59) [MSC v.1930 64 bit (AMD64)] on win32
>>> pip_install("open3d")
Detected SlicerElastix
[Qt] libpng warning: iCCP: profile 'ICC Profile': 'CMYK': invalid ICC profile color space
[Qt] libpng warning: iCCP: known incorrect sRGB profile
Loading Slicer RC file [C:/Users/sjstan70/.slicerrc.py]
[Qt] QTextCursor::setPosition: Position '-120' out of range
Requirement already satisfied: open3d in c:\users\sjstan70\desktop\slicer 5.3.0-2022-12-03\lib\python\lib\site-packages (0.16.0)
Requirement already satisfied: dash>=2.6.0 in c:\users\sjstan70\desktop\slicer 5.3.0-2022-12-03\lib\python\lib\site-packages (from open3d) (2.7.0)
Requirement already satisfied: nbformat==5.5.0 in c:\users\sjstan70\desktop\slicer 5.3.0-2022-12-03\lib\python\lib\site-packages (from open3d) (5.5.0)
Requirement already satisfied: configargparse in c:\users\sjstan70\desktop\slicer 5.3.0-2022-12-03\lib\python\lib\site-packages (from open3d) (1.5.3)
Requirement already satisfied: ipywidgets>=7.6.0 in c:\users\sjstan70\desktop\slicer 5.3.0-2022-12-03\lib\python\lib\site-packages (from open3d) (8.0.3)
Requirement already satisfied: numpy>=1.18.0 in c:\users\sjstan70\desktop\slicer 5.3.0-2022-12-03\lib\python\lib\site-packages (from open3d) (1.23.4)
Requirement already satisfied: jsonschema>=2.6 in c:\users\sjstan70\desktop\slicer 5.3.0-2022-12-03\lib\python\lib\site-packages (from nbformat==5.5.0->open3d) (4.17.3)
Requirement already satisfied: jupyter_core in c:\users\sjstan70\desktop\slicer 5.3.0-2022-12-03\lib\python\lib\site-packages (from nbformat==5.5.0->open3d) (5.1.0)
Requirement already satisfied: traitlets>=5.1 in c:\users\sjstan70\desktop\slicer 5.3.0-2022-12-03\lib\python\lib\site-packages (from nbformat==5.5.0->open3d) (5.6.0)
Requirement already satisfied: fastjsonschema in c:\users\sjstan70\desktop\slicer 5.3.0-2022-12-03\lib\python\lib\site-packages (from nbformat==5.5.0->open3d) (2.16.2)
Requirement already satisfied: plotly>=5.0.0 in c:\users\sjstan70\desktop\slicer 5.3.0-2022-12-03\lib\python\lib\site-packages (from dash>=2.6.0->open3d) (5.11.0)
Requirement already satisfied: dash-html-components==2.0.0 in c:\users\sjstan70\desktop\slicer 5.3.0-2022-12-03\lib\python\lib\site-packages (from dash>=2.6.0->open3d) (2.0.0)
Requirement already satisfied: Flask>=1.0.4 in c:\users\sjstan70\desktop\slicer 5.3.0-2022-12-03\lib\python\lib\site-packages (from dash>=2.6.0->open3d) (2.2.2)
Requirement already satisfied: dash-table==5.0.0 in c:\users\sjstan70\desktop\slicer 5.3.0-2022-12-03\lib\python\lib\site-packages (from dash>=2.6.0->open3d) (5.0.0)
Requirement already satisfied: dash-core-components==2.0.0 in c:\users\sjstan70\desktop\slicer 5.3.0-2022-12-03\lib\python\lib\site-packages (from dash>=2.6.0->open3d) (2.0.0)
Requirement already satisfied: ipython>=6.1.0 in c:\users\sjstan70\desktop\slicer 5.3.0-2022-12-03\lib\python\lib\site-packages (from ipywidgets>=7.6.0->open3d) (8.7.0)
Requirement already satisfied: ipykernel>=4.5.1 in c:\users\sjstan70\desktop\slicer 5.3.0-2022-12-03\lib\python\lib\site-packages (from ipywidgets>=7.6.0->open3d) (6.19.0)
Requirement already satisfied: widgetsnbextension~=4.0 in c:\users\sjstan70\desktop\slicer 5.3.0-2022-12-03\lib\python\lib\site-packages (from ipywidgets>=7.6.0->open3d) (4.0.4)
Requirement already satisfied: jupyterlab-widgets~=3.0 in c:\users\sjstan70\desktop\slicer 5.3.0-2022-12-03\lib\python\lib\site-packages (from ipywidgets>=7.6.0->open3d) (3.0.4)
Requirement already satisfied: Werkzeug>=2.2.2 in c:\users\sjstan70\desktop\slicer 5.3.0-2022-12-03\lib\python\lib\site-packages (from Flask>=1.0.4->dash>=2.6.0->open3d) (2.2.2)
Requirement already satisfied: Jinja2>=3.0 in c:\users\sjstan70\desktop\slicer 5.3.0-2022-12-03\lib\python\lib\site-packages (from Flask>=1.0.4->dash>=2.6.0->open3d) (3.1.2)
Requirement already satisfied: itsdangerous>=2.0 in c:\users\sjstan70\desktop\slicer 5.3.0-2022-12-03\lib\python\lib\site-packages (from Flask>=1.0.4->dash>=2.6.0->open3d) (2.1.2)
Requirement already satisfied: click>=8.0 in c:\users\sjstan70\desktop\slicer 5.3.0-2022-12-03\lib\python\lib\site-packages (from Flask>=1.0.4->dash>=2.6.0->open3d) (8.1.3)
Requirement already satisfied: importlib-metadata>=3.6.0 in c:\users\sjstan70\desktop\slicer 5.3.0-2022-12-03\lib\python\lib\site-packages (from Flask>=1.0.4->dash>=2.6.0->open3d) (5.1.0)
Requirement already satisfied: pyzmq>=17 in c:\users\sjstan70\desktop\slicer 5.3.0-2022-12-03\lib\python\lib\site-packages (from ipykernel>=4.5.1->ipywidgets>=7.6.0->open3d) (24.0.1)
Requirement already satisfied: comm>=0.1.1 in c:\users\sjstan70\desktop\slicer 5.3.0-2022-12-03\lib\python\lib\site-packages (from ipykernel>=4.5.1->ipywidgets>=7.6.0->open3d) (0.1.1)
Requirement already satisfied: packaging in c:\users\sjstan70\desktop\slicer 5.3.0-2022-12-03\lib\python\lib\site-packages (from ipykernel>=4.5.1->ipywidgets>=7.6.0->open3d) (21.3)
Requirement already satisfied: nest-asyncio in c:\users\sjstan70\desktop\slicer 5.3.0-2022-12-03\lib\python\lib\site-packages (from ipykernel>=4.5.1->ipywidgets>=7.6.0->open3d) (1.5.6)
Requirement already satisfied: jupyter-client>=6.1.12 in c:\users\sjstan70\desktop\slicer 5.3.0-2022-12-03\lib\python\lib\site-packages (from ipykernel>=4.5.1->ipywidgets>=7.6.0->open3d) (7.4.8)
Requirement already satisfied: matplotlib-inline>=0.1 in c:\users\sjstan70\desktop\slicer 5.3.0-2022-12-03\lib\python\lib\site-packages (from ipykernel>=4.5.1->ipywidgets>=7.6.0->open3d) (0.1.6)
Requirement already satisfied: tornado>=6.1 in c:\users\sjstan70\desktop\slicer 5.3.0-2022-12-03\lib\python\lib\site-packages (from ipykernel>=4.5.1->ipywidgets>=7.6.0->open3d) (6.2)
Requirement already satisfied: psutil in c:\users\sjstan70\desktop\slicer 5.3.0-2022-12-03\lib\python\lib\site-packages (from ipykernel>=4.5.1->ipywidgets>=7.6.0->open3d) (5.9.4)
Requirement already satisfied: debugpy>=1.0 in c:\users\sjstan70\desktop\slicer 5.3.0-2022-12-03\lib\python\lib\site-packages (from ipykernel>=4.5.1->ipywidgets>=7.6.0->open3d) (1.6.4)
Requirement already satisfied: pickleshare in c:\users\sjstan70\desktop\slicer 5.3.0-2022-12-03\lib\python\lib\site-packages (from ipython>=6.1.0->ipywidgets>=7.6.0->open3d) (0.7.5)
Requirement already satisfied: jedi>=0.16 in c:\users\sjstan70\desktop\slicer 5.3.0-2022-12-03\lib\python\lib\site-packages (from ipython>=6.1.0->ipywidgets>=7.6.0->open3d) (0.18.2)
Requirement already satisfied: decorator in c:\users\sjstan70\desktop\slicer 5.3.0-2022-12-03\lib\python\lib\site-packages (from ipython>=6.1.0->ipywidgets>=7.6.0->open3d) (5.1.1)
Requirement already satisfied: prompt-toolkit<3.1.0,>=3.0.11 in c:\users\sjstan70\desktop\slicer 5.3.0-2022-12-03\lib\python\lib\site-packages (from ipython>=6.1.0->ipywidgets>=7.6.0->open3d) (3.0.36)
Requirement already satisfied: colorama in c:\users\sjstan70\desktop\slicer 5.3.0-2022-12-03\lib\python\lib\site-packages (from ipython>=6.1.0->ipywidgets>=7.6.0->open3d) (0.4.6)
Requirement already satisfied: pygments>=2.4.0 in c:\users\sjstan70\desktop\slicer 5.3.0-2022-12-03\lib\python\lib\site-packages (from ipython>=6.1.0->ipywidgets>=7.6.0->open3d) (2.13.0)
Requirement already satisfied: stack-data in c:\users\sjstan70\desktop\slicer 5.3.0-2022-12-03\lib\python\lib\site-packages (from ipython>=6.1.0->ipywidgets>=7.6.0->open3d) (0.6.2)
Requirement already satisfied: backcall in c:\users\sjstan70\desktop\slicer 5.3.0-2022-12-03\lib\python\lib\site-packages (from ipython>=6.1.0->ipywidgets>=7.6.0->open3d) (0.2.0)
Requirement already satisfied: pyrsistent!=0.17.0,!=0.17.1,!=0.17.2,>=0.14.0 in c:\users\sjstan70\desktop\slicer 5.3.0-2022-12-03\lib\python\lib\site-packages (from jsonschema>=2.6->nbformat==5.5.0->open3d) (0.19.2)
Requirement already satisfied: attrs>=17.4.0 in c:\users\sjstan70\desktop\slicer 5.3.0-2022-12-03\lib\python\lib\site-packages (from jsonschema>=2.6->nbformat==5.5.0->open3d) (22.1.0)
Requirement already satisfied: tenacity>=6.2.0 in c:\users\sjstan70\desktop\slicer 5.3.0-2022-12-03\lib\python\lib\site-packages (from plotly>=5.0.0->dash>=2.6.0->open3d) (8.1.0)
Requirement already satisfied: platformdirs>=2.5 in c:\users\sjstan70\desktop\slicer 5.3.0-2022-12-03\lib\python\lib\site-packages (from jupyter_core->nbformat==5.5.0->open3d) (2.6.0)
Requirement already satisfied: pywin32>=1.0 in c:\users\sjstan70\desktop\slicer 5.3.0-2022-12-03\lib\python\lib\site-packages (from jupyter_core->nbformat==5.5.0->open3d) (305)
Requirement already satisfied: zipp>=0.5 in c:\users\sjstan70\desktop\slicer 5.3.0-2022-12-03\lib\python\lib\site-packages (from importlib-metadata>=3.6.0->Flask>=1.0.4->dash>=2.6.0->open3d) (3.11.0)
Requirement already satisfied: parso<0.9.0,>=0.8.0 in c:\users\sjstan70\desktop\slicer 5.3.0-2022-12-03\lib\python\lib\site-packages (from jedi>=0.16->ipython>=6.1.0->ipywidgets>=7.6.0->open3d) (0.8.3)
Requirement already satisfied: MarkupSafe>=2.0 in c:\users\sjstan70\desktop\slicer 5.3.0-2022-12-03\lib\python\lib\site-packages (from Jinja2>=3.0->Flask>=1.0.4->dash>=2.6.0->open3d) (2.1.1)
Requirement already satisfied: entrypoints in c:\users\sjstan70\desktop\slicer 5.3.0-2022-12-03\lib\python\lib\site-packages (from jupyter-client>=6.1.12->ipykernel>=4.5.1->ipywidgets>=7.6.0->open3d) (0.4)
Requirement already satisfied: python-dateutil>=2.8.2 in c:\users\sjstan70\desktop\slicer 5.3.0-2022-12-03\lib\python\lib\site-packages (from jupyter-client>=6.1.12->ipykernel>=4.5.1->ipywidgets>=7.6.0->open3d) (2.8.2)
Requirement already satisfied: wcwidth in c:\users\sjstan70\desktop\slicer 5.3.0-2022-12-03\lib\python\lib\site-packages (from prompt-toolkit<3.1.0,>=3.0.11->ipython>=6.1.0->ipywidgets>=7.6.0->open3d) (0.2.5)
Requirement already satisfied: pyparsing!=3.0.5,>=2.0.2 in c:\users\sjstan70\desktop\slicer 5.3.0-2022-12-03\lib\python\lib\site-packages (from packaging->ipykernel>=4.5.1->ipywidgets>=7.6.0->open3d) (3.0.9)
Requirement already satisfied: asttokens>=2.1.0 in c:\users\sjstan70\desktop\slicer 5.3.0-2022-12-03\lib\python\lib\site-packages (from stack-data->ipython>=6.1.0->ipywidgets>=7.6.0->open3d) (2.2.1)
Requirement already satisfied: pure-eval in c:\users\sjstan70\desktop\slicer 5.3.0-2022-12-03\lib\python\lib\site-packages (from stack-data->ipython>=6.1.0->ipywidgets>=7.6.0->open3d) (0.2.2)
Requirement already satisfied: executing>=1.2.0 in c:\users\sjstan70\desktop\slicer 5.3.0-2022-12-03\lib\python\lib\site-packages (from stack-data->ipython>=6.1.0->ipywidgets>=7.6.0->open3d) (1.2.0)
Requirement already satisfied: six in c:\users\sjstan70\desktop\slicer 5.3.0-2022-12-03\lib\python\lib\site-packages (from asttokens>=2.1.0->stack-data->ipython>=6.1.0->ipywidgets>=7.6.0->open3d) (1.16.0)
[notice] A new release of pip available: 22.3 -> 22.3.1
[notice] To update, run: python-real.exe -m pip install --upgrade pip
>>> import open3d
>>>
Requirement already satisfied: cpdalp in c:\users\sjstan70\desktop\slicer 5.3.0-2022-12-03\lib\python\lib\site-packages (1.2.0)
Requirement already satisfied: numpy in c:\users\sjstan70\desktop\slicer 5.3.0-2022-12-03\lib\python\lib\site-packages (from cpdalp) (1.23.4)
[notice] A new release of pip available: 22.3 -> 22.3.1
[notice] To update, run: python-real.exe -m pip install --upgrade pip
Processing c:\users\sjstan70\appdata\local\na-mic\slicer\cache\slicerio\open3d-0.14.1+816263b-cp39-cp39-win_amd64.whl
ERROR: Wheel 'open3d' located at C:\Users\sjstan70\AppData\Local\NA-MIC\Slicer\cache\SlicerIO\open3d-0.14.1+816263b-cp39-cp39-win_amd64.whl is invalid.
[notice] A new release of pip available: 22.3 -> 22.3.1
[notice] To update, run: python-real.exe -m pip install --upgrade pip
Traceback (most recent call last):
File "C:/Users/sjstan70/Desktop/Slicer 5.3.0-2022-12-03/NA-MIC/Extensions-31446/SlicerMorph/lib/Slicer-5.3/qt-scripted-modules/ALPACA.py", line 188, in setup
slicer.util.pip_install([wheelPath])
File "C:\Users\sjstan70\Desktop\Slicer 5.3.0-2022-12-03\bin\Python\slicer\util.py", line 3574, in pip_install
_executePythonModule('pip', args)
File "C:\Users\sjstan70\Desktop\Slicer 5.3.0-2022-12-03\bin\Python\slicer\util.py", line 3536, in _executePythonModule
logProcessOutput(proc)
File "C:\Users\sjstan70\Desktop\Slicer 5.3.0-2022-12-03\bin\Python\slicer\util.py", line 3505, in logProcessOutput
raise CalledProcessError(retcode, proc.args, output=proc.stdout, stderr=proc.stderr)
subprocess.CalledProcessError: Command '['C:/Users/sjstan70/Desktop/Slicer 5.3.0-2022-12-03/bin/../bin\\PythonSlicer.EXE', '-m', 'pip', 'install', 'C:/Users/sjstan70/AppData/Local/NA-MIC/Slicer/cache/SlicerIO/open3d-0.14.1+816263b-cp39-cp39-win_amd64.whl']' returned non-zero exit status 1.