Can't upgrade open3d

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1

Hi,
When I first load ALPACA, it failed to upgrade and it hit “Error: please check the url of the open3d wheel in the script” .
I have tried the version 5.0.3 and 5.1.0. My computer system is windows 11.
I have searched in the forum and find a similar situation(Can't load open3d) and tried
type pip_install("open3d") into your python console and paste log.
After the pip install, type import open3d into your console, and paste the error message (if there is one).
it showed
Python 3.9.10 (main, Jul 8 2022, 02:32:50) [MSC v.1930 64 bit (AMD64)] on win32

pip_install(“open3d”)

Collecting open3d

Using cached open3d-0.15.1-cp39-cp39-win_amd64.whl (117.0 MB)

Requirement already satisfied: jupyter-packaging~=0.10 in d:\3d\slicer 5.0.3\lib\python\lib\site-packages (from open3d) (0.12.3)

Requirement already satisfied: wheel>=0.36.0 in d:\3d\slicer 5.0.3\lib\python\lib\site-packages (from open3d) (0.37.1)

Requirement already satisfied: setuptools>=40.8.0 in d:\3d\slicer 5.0.3\lib\python\lib\site-packages (from open3d) (60.9.3)

Requirement already satisfied: ipywidgets>=7.6.0 in d:\3d\slicer 5.0.3\lib\python\lib\site-packages (from open3d) (8.0.2)

Requirement already satisfied: numpy>=1.18.0 in d:\3d\slicer 5.0.3\lib\python\lib\site-packages (from open3d) (1.22.1)

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Requirement already satisfied: pycparser in d:\3d\slicer 5.0.3\lib\python\lib\site-packages (from cffi>=1.0.1->argon2-cffi-bindings->argon2-cffi->jupyter-server~=1.16->jupyterlab==3.*,>=3.0.0->open3d) (2.21)

Installing collected packages: open3d

WARNING: The script open3d.exe is installed in ‘D:\3D\Slicer 5.0.3\lib\Python\Scripts’ which is not on PATH.

Consider adding this directory to PATH or, if you prefer to suppress this warning, use --no-warn-script-location.

Successfully installed open3d-0.15.1

WARNING: You are using pip version 22.0.3; however, version 22.2.2 is available.

You should consider upgrading via the ‘D:\3D\Slicer 5.0.3\bin\python-real.exe -m pip install --upgrade pip’ command.

import open3d
I was wondering what would I do next.

Thanks.

2

We are now using a specific version of open3d that’s compatible with ALPACA and Slicer, and manually doing pip_install(“open3d”) will not help you.

The error suggests there was a problem reaching out to the URL link to download the wheel. Are you behind a firewall? What operating system are you trying this one? Can you get to these URL on that computer?

windows: https://app.box.com/shared/static/friq8fhfi8n4syklt1v47rmuf58zro75.whl
Mac: https://app.box.com/shared/static/ixhac95jrx7xdxtlagwgns7vt9b3mbqu.whl
Linux https://app.box.com/shared/static/wyzk0f9jhefrbm4uukzym0sow5bf26yi.whl

4

Thanks for your reply！
There might be a firewall, and I usually use Virtual Private Network to browse the web. I have tried Windos 11 and mac os(12.5.1) . I can get the URL both on windos and mac. Whether the downloaded .whl file should be put in a specific folder?

Thanks

5

So you can download wheels from the URL, but the ALPACA open3d install fails? Or did you download the wheels from a computer other than the one that open3d install fail?

Anyways, if you rename the wheels appropriately you can do
pip_install("path_to_correct_wheel")

For windows rename the wheel to open3d-0.14.1+816263b-cp39-cp39-win_amd64.whl
For mac rename it to open3d-0.14.1+816263b-cp39-cp39-macosx_10_15_x86_64.whl

6

Hi everyone,

I have a student working with me who is getting this error when attempting this solution. He is on Mac and has Slicer 5.2.2.

image
image1280×692 364 KB

7

Is this generated by the ALPACA module of the SlicerMorph extension when installing, or are you trying to install open3d on your own? it is not clear where the error is generated from. Normally you would use the extension manager to install SlicerMorph, and when you switch to ALPACA the first time, it should download and install packages for you automatically (barring any network issues).

In any event, I think they key is the “Certificate Verify Failed” message. Are you behind a firewall or a corporate network? They can interfere with package installs. Is it possible for you to try this on a more open network and see if it resolves?