I have a brain MRIs where the tumor is segmented in proprietary software on the T1+C series and output into what I believe is DICOM-RT format. I can import the DICOM directory correctly after installing the RT extension into Slicer-3D. However, so far I´ve not been able to output this segmented object as a mask (for subsequent use in my statistics program) into its own NIFTI retaining the registration to the T1+C series. I can convert the segmented object and the T1 into nifti, but the registration between the two is obviously off. Any idea how I can output these two into seperate nifti files?
Operating system:Mac OS X
Slicer version:4.10.0
Expected behavior:
Actual behavior: