Andras, I am now trying to convert nrrd files to DICOM. The main image is converting just fine, but I am not able to figure out how to convert just the contour, as it does not show up when using “Create a DICOM series.” How can I also convert this file?

You are trying to convert nrrd files into a RT Structure Set using 3D Slicer? By coincidence, I documented this procedure earlier today. Load all images. At time of load, click “Labelmap” checkbox for each structure Go to Segmentation module For “Active segmentation”, choose “Create new segmentat…

When I am loading the images, I am not seeing a “Labelmap” checkbox.

[image] Josiah_McAllister: When I am loading the images, I am not seeing a “Labelmap” checkbox. Click “Show options” in the Add data dialog. If you already have your contours as segmentation you can start at step 7.

I am not seeing a “create new subject” option once I am in the data module, or any of the steps past 7.

You should see this when you right-click in the big white empty area in the Subject hierarchy tab of Data module: [image]

That is not what I have. I have version 4.6.2, so I’m not sure if that is where the difference is.

4.6.2 is very old (almost a year). Use the latest nightly build.

When I click on export on the final step, nothing happens. Nothing shows up in the folder which I have selected, and the export window doesn’t change or go away.

Please copy the complete application log (menu: Help / Report a bug). Scrub any patient info from the logs before posting.

[image] Josiah_McAllister: I am now trying to convert nrrd files to DICOM There are very different ways to do this, and the approach will be different depending on your specific needs. Can you explain why you want to convert these nrrd files to DICOM? What do you want to do next with those D…

Convert image and segmentation to DICOM

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Convert image and segmentation to DICOM

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