We have a standard workflow that uses a LabelMap file which is then converted to a Segment node.
Is it possible to convert a LabelMapVolume to a Segmentation using the python API?
We have a standard workflow that uses a LabelMap file which is then converted to a Segment node.
Is it possible to convert a LabelMapVolume to a Segmentation using the python API?
For reference this is the solution I worked out.
labelMapNode = slicer.util.getNodesByClass('vtkMRMLLabelMapVolumeNode')[0]
segNode = slicer.util.getNodesByClass('vtkMRMLSegmentationNode')[0]
logic = slicer.util.getModuleLogic('Segmentations')
logic.ImportLabelmapToSegmentationNodeWithTerminology(contourImageNode, segNode, "")