Hi all, a friend of mine was in an accident that caused her height loss in one of her vertebrae. Her birthday is coming up so I thought it’d be fun to giver her a 3D print of her broken spine. I have her MRIs and watched a few 3D Slicer tutorials but my files dont seem to be working right. It looks…

When MRs are acquired they often save time by acquiring anisotropic data. There’s some more description and some suggestions here: [image] Combining volumes - what am I missing? Support Operating system: Mac - High Sierra Slicer version: 4.8.1 Expected behavior: One pe…

Hey Sythic, what you have there looks like a 2mm slice CT scan. I’ve created spinal models from what you have before. Using mainly the sagittal view (yellow) that you have and the FastGrowCutEffect add-on. the DICOM has been generated from the sagittal view, so it has a high resolution, but every 2m…

Note that since Slicer-4.8, Segment editor module should be used for segmentation instead of the old Editor module. Segment editor module has fundamental changes, many improvements and fixes. It has a completely reworked, much faster and easier-to-use grow-cut effect: Grow from seeds effect. It also…

Hey guys, thanks for the great tips. I actually got another disc of a much higher res MRI/CT she did which had like 500 layers and the bones were properly contrasted. It’s not perfect but pretty happy with how it came out without any tedious rotoscoping each layer. …

Hello everyone! Thank you all for a great forum and resource! It’s been amazingly helpful. Does anyone know of any video tutorial examples of working with this type of “1 hi-res image + 2 strips” scenario?

There is nothing special about segmenting a handful of slices that cover a narrow region. You can use the Segment Editor as usual. What would you like to segment on what kind of images?

Thank you for the reply! I’ve successfully reconstructed a small segment. But this MRI file contains just one good resolution transverse slice and then two long narrow strips that aren’t full regular slice images. I’m trying to isolate, then export a spine model as above. Do you know of any videos …

Creating a 3d model from MRI files

Support

pieper (Steve Pieper (Isomics, Inc.)) June 21, 2018, 6:11pm 2

When MRs are acquired they often save time by acquiring anisotropic data. There’s some more description and some suggestions here:

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Creating a 3d model from MRI files

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