Hi all,
Anyone know how to calculate the dice similarity coefficient using 3D slicer?
You can use Segment Comparison module (in SlicerRT extension).
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Hi,
is the module name “SlicerRT” or “Segment comparison module”? I can’t find either of them.
What is the “reference segment” image and “compare segment” one?
Sincerely
Gonzalo Rojas Costa
Dear @Gonzalo_Rojas_Costa,
The reference segment is your ground truth labeling, while the compare segment is your volume segmentation
but I think both must be in .nrrd format.
Dear MOHD AKMAL MASUD
I want to calculate the dice similarity coefficient using 3D slicer. However,
I cannot find how to upload the test and reference segment. when I click on a reference segment and when I want to select a segmentation which has two options: rename new segmentations or delete current segmentation. I do not know what to do to find my prepared reference segment.
I would be grateful if you guide me with this.
You have to upload in data module first.
I already uploaded my data. I clicked on the Data then chose file to add then I selected two pictures one of them is mask and another is reference.
Could you guide step by step please, I tried everything still can’t make comparison.
I need to remote yourself by anydesk or teamviewer apps. If can, let me know
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Hello
Whenever you have time, inform me and I’d be grateful to access to my laptop and I’ll give you my anydesk address.
Kind regards
Paria
Ok, i will let you know
The segmentation needs to be loaded as a “segmentation” node in Slicer, not volume. What is the file format you are using?
Hello Everyone
I want to calculate the dice similarity coefficient using 3D slicer. However,
I cannot find how to upload the test and reference segment. when I click on a reference segment and when I want to select a segmentation which has two options: rename new segmentations or delete current segmentation. I do not know what to do to find my prepared reference segment.
I would be grateful if someone could help me out.
Hello Dear MOHD AKMAL MASUD
Sorry for reaching you at the weekends. I tried very hard and I’m quite frustrated, still I couldn’t find a problem that why I cannot calculate the dice coeffiency. Could you please connect to my computer as remote and take a look. I really appreciate it.
Best regards,
Paria
Yes sure. Tonight, at 9pm Malaysia time.
Sure thank you very much.
Okay, I will remote just a minute. Give me dinner first
I’m still waiting for you…