Hi all,
Anyone know how to calculate the dice similarity coefficient using 3D slicer?
You can use Segment Comparison module (in SlicerRT extension).
Hi,
is the module name “SlicerRT” or “Segment comparison module”? I can’t find either of them.
Dear @Chicago_Girl as attached
What is the “reference segment” image and “compare segment” one?
Sincerely
Gonzalo Rojas Costa
Dear @Gonzalo_Rojas_Costa,
The reference segment is your ground truth labeling, while the compare segment is your volume segmentation
but I think both must be in .nrrd format.
Dear MOHD AKMAL MASUD
I want to calculate the dice similarity coefficient using 3D slicer. However,
I cannot find how to upload the test and reference segment. when I click on a reference segment and when I want to select a segmentation which has two options: rename new segmentations or delete current segmentation. I do not know what to do to find my prepared reference segment.
I would be grateful if you guide me with this.
You have to upload in data module first.
I already uploaded my data. I clicked on the Data then chose file to add then I selected two pictures one of them is mask and another is reference.
Could you guide step by step please, I tried everything still can’t make comparison.
I need to remote yourself by anydesk or teamviewer apps. If can, let me know
Hello
Whenever you have time, inform me and I’d be grateful to access to my laptop and I’ll give you my anydesk address.
Kind regards
Paria
Ok, i will let you know
The segmentation needs to be loaded as a “segmentation” node in Slicer, not volume. What is the file format you are using?
Hello Everyone
I want to calculate the dice similarity coefficient using 3D slicer. However,
I cannot find how to upload the test and reference segment. when I click on a reference segment and when I want to select a segmentation which has two options: rename new segmentations or delete current segmentation. I do not know what to do to find my prepared reference segment.
I would be grateful if someone could help me out.
Hello Dear MOHD AKMAL MASUD
Sorry for reaching you at the weekends. I tried very hard and I’m quite frustrated, still I couldn’t find a problem that why I cannot calculate the dice coeffiency. Could you please connect to my computer as remote and take a look. I really appreciate it.
Best regards,
Paria
Yes sure. Tonight, at 9pm Malaysia time.
Sure thank you very much.
Okay, I will remote just a minute. Give me dinner first
I’m still waiting for you…