Elastix via command line


(alex goehler) #1

Hi Andras et al,

I truly enjoy the elastix module. Given that have a large amount of data that I would like process, I am looking for easiest way to do this via a command line. Is there anything available that is close to BRAINSfit (via CLI)?

Thanks
ALex


(Murat Maga) #2

If you need to process many datasets, you will probably be better of running Elastix directly, unless you need some sort of interaction with Slicer as a preprocessing step.
http://elastix.isi.uu.nl/


(alex goehler) #3

Thanks for your quick response. I am currently compiling it.


(Adam Rankin) #4

This may be of use:

https://www.slicer.org/wiki/Documentation/Nightly/ScriptRepository#Launching_Slicer